Wall clock time and date at job start Mon Mar 30 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34517 * 125.78808 * 2 1 4 4 C 1.41379 * 106.83712 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84312 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.78699 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47238 * 299.99780 * 6 5 4 8 8 C 1.52992 * 109.47161 * 60.00316 * 6 5 4 9 9 C 1.52999 * 109.46573 * 179.97438 * 6 5 4 10 10 N 1.46506 * 109.47075 * 179.97438 * 9 6 5 11 11 C 1.36929 * 120.00194 * 179.97438 * 10 9 6 12 12 H 1.07999 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.38815 * 120.00035 * 180.02562 * 11 10 9 14 14 N 1.31624 * 120.00266 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99923 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46889 * 90.00467 * 15 13 11 17 17 H 1.48505 * 109.47302 * 210.00362 * 15 13 11 18 18 H 1.48498 * 109.47131 * 330.00163 * 15 13 11 19 19 O 1.34303 * 125.78732 * 180.35042 * 2 1 3 20 20 H 1.09001 * 109.47018 * 89.97611 * 1 2 3 21 21 H 1.09000 * 109.47227 * 209.97447 * 1 2 3 22 22 H 1.08998 * 109.47001 * 329.97652 * 1 2 3 23 23 H 1.08000 * 126.57927 * 0.05503 * 3 2 1 24 24 H 1.08004 * 126.57813 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.46832 * 60.00314 * 7 6 5 27 27 H 1.09004 * 109.47261 * 300.00295 * 7 6 5 28 28 H 1.09001 * 109.47066 * 299.99783 * 8 6 5 29 29 H 1.08996 * 109.47747 * 59.99449 * 8 6 5 30 30 H 1.09002 * 109.47103 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47486 * 299.99934 * 9 6 5 32 32 H 1.09001 * 109.47362 * 60.00657 * 9 6 5 33 33 H 0.96999 * 119.99689 * 0.02562 * 10 9 6 34 34 H 0.97000 * 119.99895 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 6 5.6152 -1.3811 -1.2526 8 6 5.6169 -1.3829 1.2459 9 6 4.2870 -3.0893 -0.0030 10 7 5.4430 -3.9893 -0.0050 11 6 5.2549 -5.3456 -0.0049 12 1 4.2542 -5.7520 -0.0037 13 6 6.3503 -6.1983 -0.0063 14 7 6.1694 -7.5021 -0.0067 15 14 8.0810 -5.4954 -0.0090 16 1 8.5417 -5.3089 1.3904 17 1 8.9949 -6.4327 -0.7102 18 1 8.0824 -4.1860 -0.7094 19 8 2.2924 -1.0894 -0.0067 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 1.9665 2.1204 0.0008 24 1 4.5212 1.2433 -0.0004 25 1 6.4752 -2.0509 -1.2538 26 1 5.9598 -0.3470 -1.2520 27 1 5.0123 -1.5628 -2.1423 28 1 5.9614 -0.3487 1.2464 29 1 5.0152 -1.5657 2.1361 30 1 6.4768 -2.0527 1.2451 31 1 3.6855 -3.2720 0.8875 32 1 3.6839 -3.2714 -0.8925 33 1 6.3417 -3.6243 -0.0057 34 1 6.9349 -8.0978 -0.0072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258810117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:35 Heat of formation + Delta-G solvation = 15.934755 kcal Electronic energy + Delta-G solvation = -15407.196024 eV Core-core repulsion = 12920.940757 eV Total energy + Delta-G solvation = -2486.255267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.47150 -37.33256 -33.61603 -33.00926 -31.42127 -30.44477 -27.02390 -26.30356 -25.85687 -22.70063 -21.21962 -20.63500 -19.01735 -17.88031 -16.09360 -16.03951 -14.70152 -14.37076 -14.04877 -13.90252 -13.24462 -13.05351 -12.99422 -12.98469 -12.66527 -12.42581 -12.16851 -11.79087 -11.57675 -11.43986 -10.94726 -10.93478 -10.75415 -10.35298 -10.03576 -9.70265 -9.54185 -8.88117 -8.08343 -7.20571 -5.74436 -3.09689 1.89572 2.75588 3.05311 3.36917 3.39186 3.45475 4.60264 4.65588 4.92312 5.10840 5.16383 5.23921 5.38729 5.39282 5.44969 5.57341 5.61843 5.67474 5.87075 5.87276 6.01173 6.06139 6.10824 6.26443 6.30297 6.45738 6.53728 6.68820 6.74008 6.74176 7.38449 8.02320 8.44339 9.23183 9.95139 10.15479 11.44194 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045046 B = 0.006881 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.435766 B = 4068.300969 C = 4493.371858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.027 4.027 3 C -0.213 4.213 4 C -0.217 4.217 5 C 0.023 3.977 6 C 0.002 3.998 7 C -0.134 4.134 8 C -0.133 4.133 9 C 0.168 3.832 10 N -0.753 5.753 11 C -0.242 4.242 12 H 0.090 0.910 13 C 0.004 3.996 14 N -0.935 5.935 15 Si 0.881 3.119 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.277 1.277 19 O -0.165 6.165 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.142 0.858 24 H 0.143 0.857 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.361 0.639 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 18.208 0.035 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.232 4.232 4 C -0.237 4.237 5 C -0.028 4.028 6 C 0.001 3.999 7 C -0.191 4.191 8 C -0.191 4.191 9 C 0.041 3.959 10 N -0.399 5.399 11 C -0.371 4.371 12 H 0.108 0.892 13 C -0.191 4.191 14 N -0.583 5.583 15 Si 0.711 3.289 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.203 1.203 19 O -0.062 6.062 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.103 0.897 23 H 0.160 0.840 24 H 0.161 0.839 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.195 0.805 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.579 17.678 0.029 18.863 hybrid contribution 1.334 0.608 -0.019 1.466 sum -5.246 18.287 0.010 19.024 Atomic orbital electron populations 1.20249 0.85519 1.03760 1.03237 1.22388 0.93968 0.84462 1.06944 1.21469 0.92812 0.98983 1.09929 1.21398 0.97834 0.93790 1.10635 1.22440 0.82618 0.94174 1.03609 1.19441 0.88942 0.94230 0.97240 1.21858 0.99946 1.01197 0.96112 1.21845 0.99874 1.01186 0.96146 1.20597 0.90467 0.85577 0.99307 1.42730 1.02593 1.03396 1.91206 1.19068 0.95062 0.80311 1.42698 0.89194 1.24651 0.97213 0.95078 1.02182 1.69701 1.29630 1.01182 1.57780 0.86602 0.86256 0.78172 0.77832 1.20994 1.21649 1.20328 1.84027 1.16380 1.34730 1.71020 0.90393 0.90587 0.89743 0.83982 0.83916 0.90980 0.92776 0.92173 0.92745 0.92116 0.91100 0.95006 0.95063 0.80485 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 36.01 0.38 -0.28 16 2 C -0.03 -0.37 7.32 -35.62 -0.26 -0.63 16 3 C -0.21 -2.74 10.81 -39.70 -0.43 -3.17 16 4 C -0.22 -3.05 10.16 -39.71 -0.40 -3.45 16 5 C 0.02 0.36 5.68 -35.62 -0.20 0.16 16 6 C 0.00 0.03 0.68 -155.66 -0.11 -0.07 16 7 C -0.13 -2.09 8.17 37.16 0.30 -1.78 16 8 C -0.13 -2.06 8.17 37.15 0.30 -1.75 16 9 C 0.17 3.49 4.71 -4.04 -0.02 3.47 16 10 N -0.75 -18.22 4.81 -59.91 -0.29 -18.51 16 11 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 12 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 13 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 14 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 15 Si 0.88 22.15 27.73 -169.99 -4.71 17.43 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 18 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 19 O -0.17 -2.76 10.06 5.71 0.06 -2.70 16 20 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 24 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 25 H 0.07 1.21 6.86 -51.93 -0.36 0.85 16 26 H 0.05 0.70 7.99 -51.93 -0.41 0.29 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.70 7.99 -51.93 -0.41 0.28 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.16 6.86 -51.93 -0.36 0.80 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.36 8.37 3.22 -40.82 -0.13 8.23 16 34 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 281.81 15.07 4.25 4.25 Total: -1.00 -32.28 281.81 -5.69 -37.97 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.07 Total: 5.12 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.69 Total: -14.61 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.49 Total: -47.46 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: 0.06 Total: -2.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.28 -5.69 -37.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258810117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.900 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds