Wall clock time and date at job start Mon Mar 30 2020 03:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34517 * 125.78808 * 2 1 4 4 C 1.41379 * 106.83712 * 180.02562 * 3 2 1 5 5 C 1.34511 * 106.84312 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.78699 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47238 * 299.99780 * 6 5 4 8 8 C 1.52992 * 109.47161 * 60.00316 * 6 5 4 9 9 C 1.52999 * 109.46573 * 179.97438 * 6 5 4 10 10 N 1.46506 * 109.47075 * 179.97438 * 9 6 5 11 11 C 1.36929 * 120.00194 * 179.97438 * 10 9 6 12 12 H 1.07999 * 120.00111 * 0.02562 * 11 10 9 13 13 C 1.38815 * 120.00035 * 180.02562 * 11 10 9 14 14 N 1.31624 * 120.00266 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99923 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46889 * 90.00467 * 15 13 11 17 17 H 1.48505 * 109.47302 * 210.00362 * 15 13 11 18 18 H 1.48498 * 109.47131 * 330.00163 * 15 13 11 19 19 O 1.34303 * 125.78732 * 180.35042 * 2 1 3 20 20 H 1.09001 * 109.47018 * 89.97611 * 1 2 3 21 21 H 1.09000 * 109.47227 * 209.97447 * 1 2 3 22 22 H 1.08998 * 109.47001 * 329.97652 * 1 2 3 23 23 H 1.08000 * 126.57927 * 0.05503 * 3 2 1 24 24 H 1.08004 * 126.57813 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.46832 * 60.00314 * 7 6 5 27 27 H 1.09004 * 109.47261 * 300.00295 * 7 6 5 28 28 H 1.09001 * 109.47066 * 299.99783 * 8 6 5 29 29 H 1.08996 * 109.47747 * 59.99449 * 8 6 5 30 30 H 1.09002 * 109.47103 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47486 * 299.99934 * 9 6 5 32 32 H 1.09001 * 109.47362 * 60.00657 * 9 6 5 33 33 H 0.96999 * 119.99689 * 0.02562 * 10 9 6 34 34 H 0.97000 * 119.99895 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 6 5.6152 -1.3811 -1.2526 8 6 5.6169 -1.3829 1.2459 9 6 4.2870 -3.0893 -0.0030 10 7 5.4430 -3.9893 -0.0050 11 6 5.2549 -5.3456 -0.0049 12 1 4.2542 -5.7520 -0.0037 13 6 6.3503 -6.1983 -0.0063 14 7 6.1694 -7.5021 -0.0067 15 14 8.0810 -5.4954 -0.0090 16 1 8.5417 -5.3089 1.3904 17 1 8.9949 -6.4327 -0.7102 18 1 8.0824 -4.1860 -0.7094 19 8 2.2924 -1.0894 -0.0067 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8902 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 1.9665 2.1204 0.0008 24 1 4.5212 1.2433 -0.0004 25 1 6.4752 -2.0509 -1.2538 26 1 5.9598 -0.3470 -1.2520 27 1 5.0123 -1.5628 -2.1423 28 1 5.9614 -0.3487 1.2464 29 1 5.0152 -1.5657 2.1361 30 1 6.4768 -2.0527 1.2451 31 1 3.6855 -3.2720 0.8875 32 1 3.6839 -3.2714 -0.8925 33 1 6.3417 -3.6243 -0.0057 34 1 6.9349 -8.0978 -0.0072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258810117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:34 Heat of formation + Delta-G solvation = -4.391322 kcal Electronic energy + Delta-G solvation = -15408.077428 eV Core-core repulsion = 12920.940757 eV Total energy + Delta-G solvation = -2487.136672 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.56054 -38.82404 -35.51323 -34.07406 -33.12110 -31.84432 -28.23447 -27.82556 -27.14365 -24.54173 -22.45257 -21.82281 -20.43444 -19.80089 -17.40401 -17.16203 -16.55649 -15.99990 -15.50848 -15.37125 -14.80495 -14.40921 -14.04660 -13.91870 -13.85873 -13.69117 -13.47327 -13.32980 -12.94047 -12.74855 -12.69496 -12.37699 -12.13080 -12.09966 -11.84357 -11.54434 -11.03708 -10.73478 -9.35235 -9.12886 -8.05024 -5.39948 0.82458 1.35445 1.40689 1.47738 1.74264 2.03074 2.46677 3.25558 3.39005 3.74420 3.89519 3.95259 4.09128 4.17608 4.24218 4.59907 4.69675 4.70457 4.72937 4.82477 4.87944 4.89367 4.97037 4.98293 5.01599 5.18216 5.22952 5.33238 5.38670 5.71638 5.73697 6.17722 6.32473 7.03944 7.76735 8.00679 9.16699 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045046 B = 0.006881 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.435766 B = 4068.300969 C = 4493.371858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.217 4.217 4 C -0.204 4.204 5 C -0.013 4.013 6 C 0.011 3.989 7 C -0.131 4.131 8 C -0.131 4.131 9 C 0.170 3.830 10 N -0.748 5.748 11 C -0.242 4.242 12 H 0.050 0.950 13 C -0.061 4.061 14 N -0.984 5.984 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.292 1.292 18 H -0.246 1.246 19 O -0.199 6.199 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.112 0.888 23 H 0.173 0.827 24 H 0.167 0.833 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.370 0.630 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 21.587 0.018 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 C -0.235 4.235 4 C -0.223 4.223 5 C -0.063 4.063 6 C 0.010 3.990 7 C -0.188 4.188 8 C -0.188 4.188 9 C 0.043 3.957 10 N -0.395 5.395 11 C -0.372 4.372 12 H 0.068 0.932 13 C -0.252 4.252 14 N -0.634 5.634 15 Si 0.779 3.221 16 H -0.199 1.199 17 H -0.219 1.219 18 H -0.171 1.171 19 O -0.097 6.097 20 H 0.109 0.891 21 H 0.091 0.909 22 H 0.130 0.870 23 H 0.191 0.809 24 H 0.184 0.816 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.206 0.794 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.666 21.107 0.012 21.855 hybrid contribution 0.861 -0.447 -0.011 0.970 sum -4.805 20.660 0.000 21.211 Atomic orbital electron populations 1.20457 0.82961 1.04964 1.04424 1.23270 0.95617 0.84032 1.05949 1.21869 0.92166 1.00220 1.09275 1.21727 0.99282 0.92874 1.08431 1.22359 0.82298 0.94878 1.06737 1.19298 0.90015 0.91036 0.98645 1.21848 0.98994 1.02944 0.95033 1.21845 0.98998 1.02987 0.95010 1.20599 0.89213 0.88324 0.97551 1.42610 1.04055 1.01956 1.90896 1.19006 0.93544 0.82636 1.42062 0.93224 1.25539 1.02263 0.95294 1.02144 1.69896 1.31131 1.03008 1.59336 0.85444 0.79503 0.78597 0.78527 1.19881 1.21870 1.17054 1.84003 1.17126 1.36642 1.71889 0.89119 0.90940 0.86961 0.80941 0.81585 0.92185 0.89449 0.93030 0.89432 0.92935 0.92100 0.96664 0.96780 0.79445 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.42 71.24 0.74 -0.44 16 2 C -0.04 -0.99 7.32 24.83 0.18 -0.81 16 3 C -0.22 -4.89 10.81 22.19 0.24 -4.65 16 4 C -0.20 -5.09 10.16 22.19 0.23 -4.86 16 5 C -0.01 -0.39 5.68 24.83 0.14 -0.25 16 6 C 0.01 0.34 0.68 -52.93 -0.04 0.31 16 7 C -0.13 -3.80 8.17 71.98 0.59 -3.22 16 8 C -0.13 -3.77 8.17 71.98 0.59 -3.19 16 9 C 0.17 7.26 4.71 86.38 0.41 7.66 16 10 N -0.75 -36.52 4.81 -343.44 -1.65 -38.17 16 11 C -0.24 -14.43 10.47 84.04 0.88 -13.55 16 12 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 13 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 14 N -0.98 -64.34 13.97 21.65 0.30 -64.03 16 15 Si 0.95 45.43 27.73 68.60 1.90 47.34 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.25 -10.39 6.52 99.48 0.65 -9.74 16 19 O -0.20 -6.61 10.06 -2.49 -0.03 -6.63 16 20 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 24 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 25 H 0.06 1.87 6.86 -2.39 -0.02 1.85 16 26 H 0.09 1.94 7.99 -2.39 -0.02 1.92 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.09 1.92 7.99 -2.39 -0.02 1.90 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.86 6.86 -2.39 -0.02 1.84 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.37 16.68 3.22 -92.71 -0.30 16.39 16 34 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -71.87 281.81 5.67 -66.20 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.72 Total: 21.50 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 4.42 Total: -26.20 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -1.35 Total: -102.21 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.03 Total: -6.63 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.34 kcal Total: -71.87 5.67 -66.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258810117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.813 kcal (2) G-P(sol) polarization free energy of solvation -71.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds