Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 N 1.46893 * 109.46869 * 179.97438 * 7 6 5 9 9 C 1.46905 * 111.00033 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47300 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47123 * 180.02562 * 10 9 8 12 12 H 1.07992 * 119.99914 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47301 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46826 * 120.00261 * 15 13 11 18 18 H 1.48501 * 109.47038 * 239.99823 * 15 13 11 19 19 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 20 20 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 21 21 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 22 22 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 23 23 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 24 24 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 26 26 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 27 27 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 28 28 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 29 29 H 1.00907 * 111.00064 * 303.95427 * 8 7 6 30 30 H 1.08994 * 109.46708 * 299.99919 * 9 8 7 31 31 H 1.08998 * 109.47260 * 59.99572 * 9 8 7 32 32 H 1.09008 * 109.46908 * 299.99796 * 10 9 8 33 33 H 1.08998 * 109.47373 * 59.99569 * 10 9 8 34 34 H 0.97000 * 119.99795 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 7 6.3254 -2.8507 1.4685 9 6 6.7346 -3.1714 2.8425 10 6 7.9416 -4.1109 2.8090 11 6 8.3609 -4.4404 4.2186 12 1 7.8208 -4.0213 5.0545 13 6 9.4341 -5.2770 4.4409 14 7 10.0915 -5.7878 3.4228 15 14 9.9542 -5.6848 6.1880 16 1 9.0584 -4.9889 7.1464 17 1 9.8635 -7.1515 6.4018 18 1 11.3540 -5.2387 6.4046 19 8 2.2923 -1.0895 0.0044 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9666 2.1203 -0.0045 24 1 4.5212 1.2433 0.0076 25 1 4.5127 -2.5646 -0.4964 26 1 5.6061 -1.1601 -0.4949 27 1 5.4244 -1.0212 1.9742 28 1 4.3311 -2.4258 1.9727 29 1 6.1327 -3.6906 0.9435 30 1 7.0035 -2.2535 3.3650 31 1 5.9096 -3.6575 3.3631 32 1 7.6731 -5.0290 2.2862 33 1 8.7665 -3.6244 2.2885 34 1 10.8468 -6.3760 3.5792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258857673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -7.895365 kcal Electronic energy + Delta-G solvation = -14233.441217 eV Core-core repulsion = 11746.152599 eV Total energy + Delta-G solvation = -2487.288618 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.62960 -36.46468 -33.66520 -33.22970 -32.49140 -30.67181 -28.52480 -25.59263 -23.79446 -22.09764 -21.63887 -20.60928 -20.04634 -16.63526 -16.30504 -16.21015 -15.50816 -14.62201 -14.50868 -13.92152 -13.61586 -13.41900 -13.14377 -12.99855 -12.85671 -12.41442 -12.06312 -11.94380 -11.61147 -11.24220 -10.92937 -10.90466 -10.51629 -9.99342 -9.91572 -9.40438 -9.13332 -8.35112 -8.29799 -7.86214 -5.99308 -4.01791 1.64698 2.55358 2.83378 3.31881 3.39132 3.43442 4.40097 4.50661 4.73645 4.97786 5.01475 5.08377 5.19295 5.26154 5.32350 5.36801 5.45402 5.63125 5.78317 5.82233 6.05062 6.09509 6.16500 6.33935 6.42101 6.49938 6.97590 7.14437 7.44197 7.72689 7.81733 7.94504 8.08189 8.44043 9.05660 9.62027 11.12216 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.068466 B = 0.003665 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.866193 B = 7637.288517 C = 7766.379147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.025 4.025 3 C -0.211 4.211 4 C -0.210 4.210 5 C -0.001 4.001 6 C -0.039 4.039 7 C 0.063 3.937 8 N -0.692 5.692 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 O -0.175 6.175 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.145 0.855 24 H 0.148 0.852 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.633 11.418 -7.828 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 C -0.230 4.230 4 C -0.230 4.230 5 C -0.051 4.051 6 C -0.077 4.077 7 C -0.067 4.067 8 N -0.323 5.323 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.073 6.073 20 H 0.097 0.903 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.163 0.837 24 H 0.166 0.834 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.154 0.846 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.129 11.518 -7.922 21.344 hybrid contribution -0.275 -0.620 1.222 1.398 sum -16.404 10.898 -6.700 20.802 Atomic orbital electron populations 1.20268 0.85350 1.03906 1.03282 1.22399 0.93959 0.84336 1.06840 1.21549 0.92862 0.99211 1.09404 1.21589 0.98153 0.93954 1.09260 1.22499 0.82858 0.94751 1.05035 1.20182 0.90843 0.97767 0.98874 1.21900 0.92348 0.98215 0.94253 1.60597 1.34864 1.19861 1.16936 1.22170 0.98418 0.99637 0.86006 1.19082 0.91872 0.93362 0.96976 1.21220 1.13992 1.28384 0.92427 0.92689 1.25010 0.96415 0.96008 0.96991 1.69984 1.20722 1.32567 1.29983 0.86524 0.78468 0.78058 0.84870 1.19761 1.21030 1.20956 1.83963 1.16585 1.35106 1.71596 0.90316 0.90654 0.89530 0.83714 0.83404 0.90257 0.87864 0.90930 0.95599 0.84600 0.92264 0.96569 0.96753 0.95570 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.42 36.00 0.38 -0.14 16 2 C -0.03 -0.29 7.32 -35.63 -0.26 -0.55 16 3 C -0.21 -2.38 10.81 -39.71 -0.43 -2.81 16 4 C -0.21 -2.59 10.81 -39.70 -0.43 -3.02 16 5 C 0.00 -0.01 6.58 -35.62 -0.23 -0.25 16 6 C -0.04 -0.50 6.01 -27.88 -0.17 -0.66 16 7 C 0.06 0.94 5.67 -3.83 -0.02 0.92 16 8 N -0.69 -12.45 6.50 -113.78 -0.74 -13.19 16 9 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 10 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 O -0.18 -2.41 10.65 5.72 0.06 -2.35 16 20 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 24 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.34 5.76 8.73 -39.29 -0.34 5.41 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 294.79 15.07 4.44 4.44 Total: -1.00 -31.58 294.79 -7.65 -39.23 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.38 Total: -0.18 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.75 Total: -18.37 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.00 Total: -39.59 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: 0.06 Total: -2.35 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.58 -7.65 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258857673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.332 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds