Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 N 1.46893 * 109.46869 * 179.97438 * 7 6 5 9 9 C 1.46905 * 111.00033 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.47300 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47123 * 180.02562 * 10 9 8 12 12 H 1.07992 * 119.99914 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47301 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46826 * 120.00261 * 15 13 11 18 18 H 1.48501 * 109.47038 * 239.99823 * 15 13 11 19 19 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 20 20 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 21 21 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 22 22 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 23 23 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 24 24 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 26 26 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 27 27 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 28 28 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 29 29 H 1.00907 * 111.00064 * 303.95427 * 8 7 6 30 30 H 1.08994 * 109.46708 * 299.99919 * 9 8 7 31 31 H 1.08998 * 109.47260 * 59.99572 * 9 8 7 32 32 H 1.09008 * 109.46908 * 299.99796 * 10 9 8 33 33 H 1.08998 * 109.47373 * 59.99569 * 10 9 8 34 34 H 0.97000 * 119.99795 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 7 6.3254 -2.8507 1.4685 9 6 6.7346 -3.1714 2.8425 10 6 7.9416 -4.1109 2.8090 11 6 8.3609 -4.4404 4.2186 12 1 7.8208 -4.0213 5.0545 13 6 9.4341 -5.2770 4.4409 14 7 10.0915 -5.7878 3.4228 15 14 9.9542 -5.6848 6.1880 16 1 9.0584 -4.9889 7.1464 17 1 9.8635 -7.1515 6.4018 18 1 11.3540 -5.2387 6.4046 19 8 2.2923 -1.0895 0.0044 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9666 2.1203 -0.0045 24 1 4.5212 1.2433 0.0076 25 1 4.5127 -2.5646 -0.4964 26 1 5.6061 -1.1601 -0.4949 27 1 5.4244 -1.0212 1.9742 28 1 4.3311 -2.4258 1.9727 29 1 6.1327 -3.6906 0.9435 30 1 7.0035 -2.2535 3.3650 31 1 5.9096 -3.6575 3.3631 32 1 7.6731 -5.0290 2.2862 33 1 8.7665 -3.6244 2.2885 34 1 10.8468 -6.3760 3.5792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258857673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -27.933823 kcal Electronic energy + Delta-G solvation = -14234.310150 eV Core-core repulsion = 11746.152599 eV Total energy + Delta-G solvation = -2488.157551 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.53885 -37.93816 -35.42967 -34.14494 -33.94234 -31.95536 -30.04486 -26.92648 -25.41717 -23.25907 -22.64841 -22.43273 -21.01523 -18.53238 -17.49139 -17.30450 -16.85093 -16.50060 -15.69710 -15.20806 -14.99089 -14.75154 -14.11768 -13.99763 -13.77828 -13.73499 -13.35610 -13.13068 -13.07485 -12.80834 -12.63991 -12.39582 -12.22228 -11.84107 -11.43478 -11.26697 -10.81709 -10.57437 -9.37901 -9.19235 -8.21028 -6.32539 0.73591 1.40560 1.40992 1.54463 1.66384 1.97750 2.40506 3.12447 3.27649 3.84996 3.98861 4.10042 4.13568 4.18887 4.48925 4.52657 4.55813 4.59588 4.71275 4.81703 4.87085 4.92828 5.00402 5.04561 5.15209 5.32032 5.43450 5.65145 5.66417 5.76548 6.08677 6.23012 6.24151 6.49473 6.84632 7.36770 8.91372 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.068466 B = 0.003665 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.866193 B = 7637.288517 C = 7766.379147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.032 4.032 3 C -0.224 4.224 4 C -0.214 4.214 5 C -0.026 4.026 6 C -0.028 4.028 7 C 0.069 3.931 8 N -0.694 5.694 9 C 0.082 3.918 10 C 0.031 3.969 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 O -0.196 6.196 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.169 0.831 24 H 0.160 0.840 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.022 0.978 29 H 0.342 0.658 30 H 0.059 0.941 31 H 0.018 0.982 32 H -0.007 1.007 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.793 12.316 -7.187 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.243 4.243 4 C -0.233 4.233 5 C -0.076 4.076 6 C -0.066 4.066 7 C -0.060 4.060 8 N -0.325 5.325 9 C -0.046 4.046 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 O -0.094 6.094 20 H 0.113 0.887 21 H 0.096 0.904 22 H 0.126 0.874 23 H 0.186 0.814 24 H 0.177 0.823 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.306 12.429 -7.291 22.519 hybrid contribution 0.031 -0.857 0.960 1.287 sum -17.274 11.572 -6.331 21.735 Atomic orbital electron populations 1.20475 0.82573 1.05086 1.04652 1.23251 0.95633 0.83833 1.05419 1.21909 0.92375 1.00477 1.09499 1.21908 0.99296 0.93878 1.08241 1.22538 0.82941 0.95178 1.06984 1.20026 0.91233 0.98238 0.97082 1.21882 0.90857 0.97185 0.96121 1.60490 1.36727 1.20477 1.14810 1.21799 0.96456 0.98317 0.88065 1.18932 0.92902 0.93213 0.95599 1.21646 1.14519 1.28764 0.93510 0.92215 1.25985 0.96340 0.95688 1.01774 1.70111 1.21277 1.33162 1.32560 0.85354 0.78216 0.78035 0.79151 1.18631 1.20269 1.20254 1.83949 1.16981 1.36404 1.72095 0.88745 0.90408 0.87389 0.81353 0.82264 0.89724 0.87088 0.91018 0.95926 0.84021 0.92276 0.96385 0.98831 0.98440 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.42 71.23 0.74 -0.12 16 2 C -0.03 -0.67 7.32 24.83 0.18 -0.49 16 3 C -0.22 -4.64 10.81 22.19 0.24 -4.40 16 4 C -0.21 -5.01 10.81 22.19 0.24 -4.77 16 5 C -0.03 -0.68 6.58 24.84 0.16 -0.52 16 6 C -0.03 -0.70 6.01 29.85 0.18 -0.52 16 7 C 0.07 2.03 5.67 86.30 0.49 2.52 16 8 N -0.69 -24.88 6.50 -513.90 -3.34 -28.22 16 9 C 0.08 3.56 5.62 86.30 0.49 4.05 16 10 C 0.03 1.68 5.23 29.85 0.16 1.84 16 11 C -0.55 -31.66 9.11 25.60 0.23 -31.42 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 15 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 O -0.20 -5.24 10.65 -2.45 -0.03 -5.27 16 20 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 21 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 24 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.34 11.70 8.73 -89.69 -0.78 10.91 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -67.44 294.79 2.80 -64.64 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.28 Total: 12.52 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.57 Total: -33.37 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -3.06 Total: -85.19 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.03 Total: -5.27 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.44 2.80 -64.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258857673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.711 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds