Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00171 * 2 1 4 4 C 1.46903 * 110.99919 * 123.94986 * 2 1 3 5 5 H 1.08996 * 109.47634 * 84.86224 * 4 2 1 6 6 C 1.50704 * 109.46982 * 204.86109 * 4 2 1 7 7 H 1.08000 * 119.99859 * 119.99998 * 6 4 2 8 8 C 1.37876 * 120.00025 * 299.99998 * 6 4 2 9 9 N 1.31520 * 119.99511 * 180.02562 * 8 6 4 10 10 Si 1.86793 * 119.99972 * 0.02562 * 8 6 4 11 11 H 1.48502 * 109.47298 * 90.00159 * 10 8 6 12 12 H 1.48507 * 109.47057 * 209.99771 * 10 8 6 13 13 H 1.48495 * 109.47311 * 330.00007 * 10 8 6 14 14 C 1.50702 * 109.47377 * 324.86031 * 4 2 1 15 15 C 1.38245 * 119.97306 * 301.80064 * 14 4 2 16 16 C 1.38198 * 120.02496 * 179.72492 * 15 14 4 17 17 C 1.38468 * 119.97319 * 0.51984 * 16 15 14 18 18 F 1.35103 * 120.02414 * 179.72728 * 17 16 15 19 19 C 1.38462 * 119.94697 * 359.75198 * 17 16 15 20 20 C 1.38197 * 119.97106 * 359.97438 * 19 17 16 21 21 H 1.08994 * 109.47358 * 52.86853 * 1 2 3 22 22 H 1.09010 * 109.46900 * 292.87380 * 1 2 3 23 23 H 1.08997 * 109.47339 * 172.87557 * 1 2 3 24 24 H 1.08999 * 109.47775 * 52.40228 * 3 2 1 25 25 H 1.08995 * 109.47205 * 172.40948 * 3 2 1 26 26 H 1.09005 * 109.46786 * 292.40501 * 3 2 1 27 27 H 0.97008 * 119.99407 * 180.02562 * 9 8 6 28 28 H 1.08003 * 119.98927 * 359.97438 * 15 14 4 29 29 H 1.07996 * 120.01744 * 180.29257 * 16 15 14 30 30 H 1.07991 * 120.01135 * 179.97438 * 19 17 16 31 31 H 1.08002 * 119.98332 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 2.0397 -1.8228 0.8749 6 6 3.3790 -0.2743 1.4770 7 1 3.5828 0.1308 2.4572 8 6 4.3846 -0.3417 0.5362 9 7 5.5922 0.0869 0.8327 10 14 4.0319 -1.0417 -1.1593 11 1 3.5968 0.0514 -2.0655 12 1 5.2627 -1.6726 -1.7002 13 1 2.9560 -2.0604 -1.0603 14 6 1.0907 -0.5820 2.3288 15 6 0.8492 0.6861 2.8234 16 6 0.0153 0.8565 3.9122 17 6 -0.5699 -0.2445 4.5143 18 9 -1.3809 -0.0796 5.5822 19 6 -0.3227 -1.5146 4.0216 20 6 0.5071 -1.6820 2.9292 21 1 -0.3634 0.6203 -0.8192 22 1 -0.3633 0.3995 0.9470 23 1 -0.3634 -1.0197 -0.1274 24 1 1.5404 1.9354 0.8142 25 1 3.0766 1.3456 0.1357 26 1 1.7600 1.8510 -0.9502 27 1 6.2996 0.0399 0.1706 28 1 1.3092 1.5444 2.3563 29 1 -0.1770 1.8477 4.2955 30 1 -0.7782 -2.3741 4.4907 31 1 0.7003 -2.6726 2.5449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259246555.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = -0.206668 kcal Electronic energy + Delta-G solvation = -15518.481810 eV Core-core repulsion = 12908.066293 eV Total energy + Delta-G solvation = -2610.415517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.55402 -39.31948 -36.35010 -32.44769 -30.82962 -30.37893 -27.76647 -26.40778 -23.56877 -22.55189 -21.91091 -19.56988 -17.26766 -16.90826 -15.89609 -15.42699 -15.25934 -14.68364 -14.24261 -13.99256 -13.38498 -13.13091 -12.90618 -12.75388 -12.41220 -12.00896 -11.65181 -11.26628 -11.15493 -10.72921 -10.33782 -10.21888 -10.19419 -9.77685 -9.41908 -8.67674 -8.58300 -7.97425 -7.35442 -6.17595 -4.23110 1.63699 1.67067 3.45966 3.49709 3.65392 4.06508 4.47363 4.64578 4.93194 5.14111 5.21721 5.38122 5.53343 5.76830 5.77578 5.90992 6.08629 6.25574 6.33536 6.40012 6.43974 6.53612 6.58979 6.70106 6.84714 7.12187 7.31394 7.35957 7.42589 7.92506 8.13382 8.44044 8.83548 9.41534 10.90609 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.040521 B = 0.009128 C = 0.008714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.833501 B = 3066.754081 C = 3212.596339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.204 3.796 5 H 0.056 0.944 6 C -0.523 4.523 7 H 0.077 0.923 8 C 0.081 3.919 9 N -0.890 5.890 10 Si 0.913 3.087 11 H -0.275 1.275 12 H -0.311 1.311 13 H -0.263 1.263 14 C -0.063 4.063 15 C -0.084 4.084 16 C -0.158 4.158 17 C 0.070 3.930 18 F -0.152 7.152 19 C -0.156 4.156 20 C -0.097 4.097 21 H 0.051 0.949 22 H 0.029 0.971 23 H 0.055 0.945 24 H 0.018 0.982 25 H 0.107 0.893 26 H 0.037 0.963 27 H 0.267 0.733 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -0.372 1.684 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.267 5.267 3 C -0.131 4.131 4 C 0.098 3.902 5 H 0.074 0.926 6 C -0.561 4.561 7 H 0.095 0.905 8 C -0.124 4.124 9 N -0.526 5.526 10 Si 0.743 3.257 11 H -0.201 1.201 12 H -0.239 1.239 13 H -0.188 1.188 14 C -0.065 4.065 15 C -0.102 4.102 16 C -0.177 4.177 17 C 0.051 3.949 18 F -0.131 7.131 19 C -0.175 4.175 20 C -0.116 4.116 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.125 0.875 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.075 -0.565 1.218 10.164 hybrid contribution -0.541 0.109 0.146 0.571 sum -10.616 -0.456 1.364 10.713 Atomic orbital electron populations 1.22438 0.89996 1.00896 0.99698 1.62571 1.05646 1.14663 1.43852 1.22623 1.04885 0.88136 0.97425 1.19103 0.92761 0.95946 0.82371 0.92606 1.20832 0.90632 1.43326 1.01307 0.90472 1.25041 0.94361 0.93650 0.99374 1.69945 1.01712 1.45483 1.35478 0.86261 0.75814 0.80267 0.83359 1.20071 1.23926 1.18773 1.20935 0.95219 0.92397 0.97906 1.21218 0.95958 0.98499 0.94572 1.21094 1.00442 0.97722 0.98435 1.17638 0.95174 0.94716 0.87400 1.91432 1.71167 1.96486 1.53989 1.21006 1.01990 0.95402 0.99061 1.20978 0.96143 0.99289 0.95193 0.93055 0.95256 0.92610 0.96394 0.87493 0.94393 0.92365 0.84494 0.85662 0.85641 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.88 60.06 0.53 0.85 16 2 N -0.54 -11.37 3.24 -246.00 -0.80 -12.17 16 3 C 0.02 0.34 7.82 60.06 0.47 0.81 16 4 C 0.20 4.51 1.98 -70.01 -0.14 4.37 16 5 H 0.06 1.29 6.93 -51.93 -0.36 0.93 16 6 C -0.52 -13.57 7.18 -34.44 -0.25 -13.82 16 7 H 0.08 2.21 7.89 -52.49 -0.41 1.80 16 8 C 0.08 2.18 4.16 -17.82 -0.07 2.11 16 9 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 10 Si 0.91 22.14 24.92 -169.99 -4.24 17.91 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.31 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 14 C -0.06 -1.22 3.19 -104.62 -0.33 -1.55 16 15 C -0.08 -1.56 7.12 -39.59 -0.28 -1.84 16 16 C -0.16 -2.63 10.03 -39.51 -0.40 -3.03 16 17 C 0.07 1.16 7.30 -39.41 -0.29 0.87 16 18 F -0.15 -2.45 17.27 2.25 0.04 -2.42 16 19 C -0.16 -2.47 10.03 -39.51 -0.40 -2.87 16 20 C -0.10 -1.68 9.67 -39.60 -0.38 -2.06 16 21 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 22 H 0.03 0.50 5.28 -51.92 -0.27 0.23 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.02 0.34 5.32 -51.93 -0.28 0.06 16 25 H 0.11 2.55 4.45 -51.93 -0.23 2.32 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.14 2.59 5.23 -52.48 -0.27 2.31 16 29 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.13 1.98 7.95 -52.49 -0.42 1.57 16 LS Contribution 249.38 15.07 3.76 3.76 Total: -1.00 -27.83 249.38 -5.52 -33.35 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.53 Total: 0.62 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.54 Total: -16.15 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.02 Total: -37.07 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.24 Total: 17.91 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.83 -5.52 -33.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259246555.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.147 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds