Wall clock time and date at job start Mon Mar 30 2020 02:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00067 * 2 1 4 4 H 1.09003 * 109.47114 * 185.49183 * 3 2 1 5 5 C 1.53002 * 109.47171 * 305.48726 * 3 2 1 6 6 C 1.50697 * 109.47319 * 294.99944 * 5 3 2 7 7 H 1.08008 * 119.99868 * 359.97438 * 6 5 3 8 8 C 1.37880 * 120.00403 * 179.97438 * 6 5 3 9 9 N 1.31513 * 119.99642 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00287 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46960 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47146 * 120.00290 * 10 8 6 13 13 H 1.48499 * 109.47009 * 240.00475 * 10 8 6 14 14 C 1.50701 * 109.47462 * 65.48768 * 3 2 1 15 15 C 1.38270 * 119.98015 * 31.52476 * 14 3 2 16 16 C 1.38229 * 120.04599 * 179.97438 * 15 14 3 17 17 C 1.38219 * 120.02680 * 359.97438 * 16 15 14 18 18 C 1.38439 * 119.97586 * 0.02562 * 17 16 15 19 19 F 1.35096 * 120.02703 * 180.02562 * 18 17 16 20 20 C 1.38169 * 119.98962 * 211.50438 * 14 3 2 21 21 H 1.09006 * 109.47235 * 66.83059 * 1 2 3 22 22 H 1.09001 * 109.47380 * 186.82872 * 1 2 3 23 23 H 1.08996 * 109.47390 * 306.82946 * 1 2 3 24 24 H 1.00899 * 110.99995 * 236.04342 * 2 1 3 25 25 H 1.09003 * 109.47030 * 55.00190 * 5 3 2 26 26 H 1.08993 * 109.47284 * 175.00126 * 5 3 2 27 27 H 0.96993 * 120.00068 * 180.02562 * 9 8 6 28 28 H 1.07998 * 119.97781 * 359.70384 * 15 14 3 29 29 H 1.08001 * 119.98282 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.01158 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.01450 * 0.04001 * 20 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0806 1.3440 -0.0984 5 6 1.3964 2.1476 -1.1746 6 6 1.8672 1.5399 -2.4707 7 1 2.5280 0.6857 -2.4580 8 6 1.4544 2.0744 -3.6728 9 7 0.6502 3.1148 -3.6883 10 14 2.0375 1.3206 -5.2795 11 1 2.9278 0.1676 -4.9909 12 1 0.8645 0.8558 -6.0626 13 1 2.7832 2.3387 -6.0620 14 6 1.6251 2.0517 1.2927 15 6 1.5105 1.3114 2.4549 16 6 1.1715 1.9341 3.6416 17 6 0.9472 3.2977 3.6676 18 6 1.0616 4.0399 2.5046 19 9 0.8431 5.3728 2.5289 20 6 1.4007 3.4148 1.3162 21 1 -0.3634 0.4044 -0.9448 22 1 -0.3634 -1.0204 0.1222 23 1 -0.3634 0.6160 0.8225 24 1 1.8305 -0.5262 -0.7813 25 1 0.3085 2.0997 -1.1247 26 1 1.7169 3.1881 -1.1237 27 1 0.3595 3.4906 -4.5339 28 1 1.6817 0.2453 2.4347 29 1 1.0819 1.3548 4.5487 30 1 0.6819 3.7839 4.5948 31 1 1.4900 3.9928 0.4082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259281530.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:01 Heat of formation + Delta-G solvation = -26.659649 kcal Electronic energy + Delta-G solvation = -15044.307937 eV Core-core repulsion = 12432.745333 eV Total energy + Delta-G solvation = -2611.562604 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.52628 -39.11492 -36.08924 -32.70043 -31.13795 -29.88732 -28.55125 -25.63597 -23.84055 -22.68054 -21.63798 -19.40388 -17.01938 -16.31059 -15.99573 -15.71854 -15.27678 -15.03171 -14.58876 -13.93055 -13.53336 -13.15810 -12.72399 -12.38262 -12.23902 -11.90191 -11.47358 -11.28444 -11.00543 -10.99542 -10.78306 -10.55133 -10.13472 -9.81182 -9.17581 -8.53211 -8.46893 -8.21845 -7.60135 -6.11343 -4.15466 1.56424 1.60657 3.23983 3.32484 3.35099 3.99349 4.36087 4.58124 4.98470 5.14575 5.25731 5.30531 5.50634 5.66182 5.84271 6.02348 6.19047 6.26533 6.34050 6.46494 6.52879 6.60728 6.67611 6.71911 7.02247 7.27583 7.39740 7.56914 7.76864 7.89412 8.11934 8.26740 8.90770 9.49777 10.99466 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.007781 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.717307 B = 3597.596824 C = 4170.398402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.681 5.681 3 C 0.117 3.883 4 H 0.085 0.915 5 C -0.007 4.007 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.890 5.890 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.033 4.033 15 C -0.112 4.112 16 C -0.105 4.105 17 C -0.170 4.170 18 C 0.088 3.912 19 F -0.147 7.147 20 C -0.148 4.148 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.347 0.653 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 -2.736 11.217 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.310 5.310 3 C 0.008 3.992 4 H 0.103 0.897 5 C -0.045 4.045 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.529 5.529 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.033 4.033 15 C -0.131 4.131 16 C -0.123 4.123 17 C -0.189 4.189 18 C 0.069 3.931 19 F -0.125 7.125 20 C -0.167 4.167 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.165 0.835 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.505 -2.649 11.778 12.083 hybrid contribution -0.060 0.331 -1.913 1.943 sum 0.446 -2.317 9.865 10.143 Atomic orbital electron populations 1.22151 0.89161 1.00113 1.01156 1.60747 1.07628 1.13521 1.49150 1.20651 0.99219 0.88422 0.90930 0.89674 1.19846 0.97072 0.95958 0.91607 1.21161 1.29418 1.14919 0.90805 0.92545 1.25004 0.94958 0.94913 0.99290 1.69968 1.33805 1.22771 1.26307 0.86544 0.78570 0.79254 0.83699 1.19660 1.21045 1.20983 1.20075 0.94985 0.92180 0.96103 1.21219 0.99466 1.01041 0.91327 1.20960 0.99547 0.93458 0.98339 1.20998 1.05813 0.95036 0.97048 1.17719 1.02995 0.77291 0.95066 1.91459 1.92579 1.31181 1.97323 1.21389 1.01957 0.95940 0.97421 0.93995 0.93057 0.92750 0.83473 0.95538 0.95849 0.92921 0.84545 0.85789 0.85709 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.62 60.06 0.58 1.01 16 2 N -0.68 -12.23 5.74 -115.25 -0.66 -12.90 16 3 C 0.12 2.31 2.90 -68.86 -0.20 2.11 16 4 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 5 C -0.01 -0.17 3.51 -27.88 -0.10 -0.26 16 6 C -0.52 -13.82 8.62 -34.44 -0.30 -14.12 16 7 H 0.06 1.43 7.17 -52.48 -0.38 1.06 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 10 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C -0.03 -0.59 4.59 -104.64 -0.48 -1.07 16 15 C -0.11 -1.73 8.38 -39.57 -0.33 -2.07 16 16 C -0.10 -1.42 10.04 -39.59 -0.40 -1.82 16 17 C -0.17 -2.44 10.03 -39.51 -0.40 -2.84 16 18 C 0.09 1.50 7.30 -39.42 -0.29 1.21 16 19 F -0.15 -2.54 17.27 2.25 0.04 -2.50 16 20 C -0.15 -2.74 9.12 -39.52 -0.36 -3.10 16 21 H 0.04 0.86 6.53 -51.93 -0.34 0.52 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.96 6.48 -51.93 -0.34 0.62 16 24 H 0.35 6.34 7.90 -39.29 -0.31 6.03 16 25 H 0.03 0.69 6.20 -51.93 -0.32 0.37 16 26 H 0.02 0.61 6.22 -51.93 -0.32 0.29 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.14 2.01 7.44 -52.49 -0.39 1.61 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 2.88 6.01 -52.49 -0.32 2.56 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -28.07 261.38 -6.87 -34.94 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -3.54 Total: 5.13 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.37 Total: -19.39 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.08 Total: -38.05 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.07 -6.87 -34.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259281530.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.285 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds