Wall clock time and date at job start Mon Mar 30 2020 02:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46897 * 111.00067 * 2 1 4 4 H 1.09003 * 109.47114 * 185.49183 * 3 2 1 5 5 C 1.53002 * 109.47171 * 305.48726 * 3 2 1 6 6 C 1.50697 * 109.47319 * 294.99944 * 5 3 2 7 7 H 1.08008 * 119.99868 * 359.97438 * 6 5 3 8 8 C 1.37880 * 120.00403 * 179.97438 * 6 5 3 9 9 N 1.31513 * 119.99642 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00287 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46960 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47146 * 120.00290 * 10 8 6 13 13 H 1.48499 * 109.47009 * 240.00475 * 10 8 6 14 14 C 1.50701 * 109.47462 * 65.48768 * 3 2 1 15 15 C 1.38270 * 119.98015 * 31.52476 * 14 3 2 16 16 C 1.38229 * 120.04599 * 179.97438 * 15 14 3 17 17 C 1.38219 * 120.02680 * 359.97438 * 16 15 14 18 18 C 1.38439 * 119.97586 * 0.02562 * 17 16 15 19 19 F 1.35096 * 120.02703 * 180.02562 * 18 17 16 20 20 C 1.38169 * 119.98962 * 211.50438 * 14 3 2 21 21 H 1.09006 * 109.47235 * 66.83059 * 1 2 3 22 22 H 1.09001 * 109.47380 * 186.82872 * 1 2 3 23 23 H 1.08996 * 109.47390 * 306.82946 * 1 2 3 24 24 H 1.00899 * 110.99995 * 236.04342 * 2 1 3 25 25 H 1.09003 * 109.47030 * 55.00190 * 5 3 2 26 26 H 1.08993 * 109.47284 * 175.00126 * 5 3 2 27 27 H 0.96993 * 120.00068 * 180.02562 * 9 8 6 28 28 H 1.07998 * 119.97781 * 359.70384 * 15 14 3 29 29 H 1.08001 * 119.98282 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.01158 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.01450 * 0.04001 * 20 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0806 1.3440 -0.0984 5 6 1.3964 2.1476 -1.1746 6 6 1.8672 1.5399 -2.4707 7 1 2.5280 0.6857 -2.4580 8 6 1.4544 2.0744 -3.6728 9 7 0.6502 3.1148 -3.6883 10 14 2.0375 1.3206 -5.2795 11 1 2.9278 0.1676 -4.9909 12 1 0.8645 0.8558 -6.0626 13 1 2.7832 2.3387 -6.0620 14 6 1.6251 2.0517 1.2927 15 6 1.5105 1.3114 2.4549 16 6 1.1715 1.9341 3.6416 17 6 0.9472 3.2977 3.6676 18 6 1.0616 4.0399 2.5046 19 9 0.8431 5.3728 2.5289 20 6 1.4007 3.4148 1.3162 21 1 -0.3634 0.4044 -0.9448 22 1 -0.3634 -1.0204 0.1222 23 1 -0.3634 0.6160 0.8225 24 1 1.8305 -0.5262 -0.7813 25 1 0.3085 2.0997 -1.1247 26 1 1.7169 3.1881 -1.1237 27 1 0.3595 3.4906 -4.5339 28 1 1.6817 0.2453 2.4347 29 1 1.0819 1.3548 4.5487 30 1 0.6819 3.7839 4.5948 31 1 1.4900 3.9928 0.4082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259281530.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:01 Heat of formation + Delta-G solvation = -43.750532 kcal Electronic energy + Delta-G solvation = -15045.049054 eV Core-core repulsion = 12432.745333 eV Total energy + Delta-G solvation = -2612.303720 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.86579 -40.48484 -37.60059 -34.73492 -32.52054 -31.17663 -30.33826 -27.31113 -25.55329 -24.09361 -23.06806 -20.93150 -18.74637 -17.94409 -17.42374 -17.02217 -16.73678 -16.49209 -16.45313 -15.49863 -14.76564 -14.74380 -14.35931 -13.91391 -13.86437 -13.43119 -13.08404 -12.83686 -12.63149 -12.55656 -12.42574 -12.15088 -11.87130 -11.58610 -11.13558 -10.60057 -9.83149 -9.50509 -9.20247 -8.22888 -6.33892 0.29368 0.34263 1.37490 1.38965 1.50932 2.37551 2.73023 3.10557 3.26699 3.60991 3.86637 4.01930 4.23080 4.45060 4.53517 4.59819 4.65209 4.71985 4.96989 5.00795 5.14470 5.23360 5.23907 5.37728 5.47762 5.56047 5.65356 5.77889 6.06290 6.14921 6.23070 6.60676 6.82884 7.35792 8.88823 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.035004 B = 0.007781 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.717307 B = 3597.596824 C = 4170.398402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.663 5.663 3 C 0.128 3.872 4 H 0.082 0.918 5 C 0.004 3.996 6 C -0.532 4.532 7 H 0.067 0.933 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.257 1.257 12 H -0.282 1.282 13 H -0.284 1.284 14 C -0.051 4.051 15 C -0.106 4.106 16 C -0.087 4.087 17 C -0.156 4.156 18 C 0.072 3.928 19 F -0.154 7.154 20 C -0.173 4.173 21 H 0.004 0.996 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.346 0.654 25 H -0.001 1.001 26 H -0.007 1.007 27 H 0.261 0.739 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.159 0.841 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 -4.728 13.136 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.292 5.292 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.034 4.034 6 C -0.570 4.570 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.180 1.180 12 H -0.208 1.208 13 H -0.210 1.210 14 C -0.051 4.051 15 C -0.125 4.125 16 C -0.105 4.105 17 C -0.175 4.175 18 C 0.053 3.947 19 F -0.133 7.133 20 C -0.192 4.192 21 H 0.023 0.977 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.164 0.836 25 H 0.017 0.983 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.168 0.832 29 H 0.188 0.812 30 H 0.176 0.824 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.902 -4.656 13.710 14.507 hybrid contribution -0.205 0.972 -2.427 2.622 sum 0.697 -3.685 11.283 11.890 Atomic orbital electron populations 1.22117 0.88748 1.01744 0.99210 1.60806 1.07720 1.11967 1.48663 1.20389 0.98694 0.88762 0.90378 0.90018 1.19681 0.95393 0.94960 0.93410 1.21592 1.28867 1.14874 0.91704 0.91521 1.25935 0.95143 0.95363 1.03222 1.70118 1.35500 1.24528 1.27135 0.85436 0.78158 0.78666 0.79020 1.18024 1.20815 1.20971 1.19899 0.96988 0.91932 0.96327 1.21379 0.98675 1.01472 0.90929 1.21433 0.96766 0.93203 0.99069 1.21402 1.03718 0.95380 0.96954 1.17927 1.03936 0.77275 0.95599 1.91435 1.92736 1.31762 1.97369 1.21220 1.04332 0.96441 0.97243 0.97740 0.89892 0.92584 0.83570 0.98321 0.98928 0.92999 0.83173 0.81182 0.82369 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.62 127.69 1.23 2.33 16 2 N -0.66 -23.18 5.74 -518.54 -2.97 -26.16 16 3 C 0.13 5.12 2.90 44.17 0.13 5.25 16 4 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 5 C 0.00 0.19 3.51 29.85 0.10 0.30 16 6 C -0.53 -28.74 8.62 25.60 0.22 -28.52 16 7 H 0.07 3.38 7.17 -2.91 -0.02 3.36 16 8 C 0.00 0.07 5.46 84.66 0.46 0.54 16 9 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 10 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 C -0.05 -1.82 4.59 -19.87 -0.09 -1.92 16 15 C -0.11 -2.99 8.38 22.28 0.19 -2.80 16 16 C -0.09 -1.96 10.04 22.26 0.22 -1.74 16 17 C -0.16 -3.95 10.03 22.31 0.22 -3.73 16 18 C 0.07 2.40 7.30 22.38 0.16 2.57 16 19 F -0.15 -5.39 17.27 44.97 0.78 -4.61 16 20 C -0.17 -6.68 9.12 22.31 0.20 -6.48 16 21 H 0.00 0.17 6.53 -2.38 -0.02 0.15 16 22 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.06 1.92 6.48 -2.39 -0.02 1.90 16 24 H 0.35 12.27 7.90 -89.69 -0.71 11.56 16 25 H 0.00 -0.08 6.20 -2.39 -0.01 -0.10 16 26 H -0.01 -0.42 6.22 -2.39 -0.01 -0.44 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.15 3.83 7.44 -2.91 -0.02 3.81 16 29 H 0.17 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 31 H 0.11 4.89 6.01 -2.91 -0.02 4.87 16 Total: -1.00 -63.05 261.38 3.60 -59.45 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.44 Total: 16.17 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 3.05 Total: -34.22 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -2.69 Total: -82.33 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.61 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.05 3.60 -59.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259281530.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.697 kcal (2) G-P(sol) polarization free energy of solvation -63.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds