Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 110.99975 * 2 1 4 4 H 1.08999 * 109.47641 * 33.52789 * 3 2 1 5 5 C 1.53001 * 109.46940 * 153.52294 * 3 2 1 6 6 C 1.50700 * 109.47100 * 295.00224 * 5 3 2 7 7 H 1.08000 * 120.00256 * 359.97438 * 6 5 3 8 8 C 1.37889 * 119.99924 * 180.02562 * 6 5 3 9 9 N 1.31510 * 119.99461 * 179.72232 * 8 6 5 10 10 Si 1.86798 * 120.00104 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47211 * 269.72653 * 10 8 6 12 12 H 1.48503 * 109.46912 * 29.72786 * 10 8 6 13 13 H 1.48500 * 109.47167 * 149.72533 * 10 8 6 14 14 C 1.50701 * 109.47333 * 273.51815 * 3 2 1 15 15 C 1.38216 * 120.01324 * 333.86987 * 14 3 2 16 16 C 1.38225 * 120.02559 * 179.97438 * 15 14 3 17 17 C 1.38273 * 120.04830 * 0.02562 * 16 15 14 18 18 C 1.38176 * 120.02649 * 359.97438 * 17 16 15 19 19 C 1.38436 * 120.01043 * 153.58282 * 14 3 2 20 20 F 1.35105 * 120.02728 * 0.02562 * 19 14 3 21 21 H 1.08996 * 109.47313 * 184.81134 * 1 2 3 22 22 H 1.09000 * 109.47143 * 304.80987 * 1 2 3 23 23 H 1.09002 * 109.46971 * 64.81443 * 1 2 3 24 24 H 1.00900 * 110.99846 * 123.95965 * 2 1 3 25 25 H 1.09000 * 109.47326 * 174.99912 * 5 3 2 26 26 H 1.08997 * 109.47435 * 54.99700 * 5 3 2 27 27 H 0.97002 * 119.99475 * 180.27214 * 9 8 6 28 28 H 1.07998 * 119.98600 * 359.94877 * 15 14 3 29 29 H 1.07994 * 119.97905 * 179.97438 * 16 15 14 30 30 H 1.07998 * 119.98576 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.00951 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3259 2.0176 0.5676 5 6 3.3836 1.3847 0.6431 6 6 3.2678 1.0021 2.0961 7 1 2.3007 0.7727 2.5188 8 6 4.3964 0.9458 2.8863 9 7 4.2946 0.6172 4.1556 10 14 6.0690 1.3432 2.1556 11 1 6.6864 0.1002 1.6273 12 1 5.9067 2.3231 1.0517 13 1 6.9435 1.9221 3.2069 14 6 2.0941 1.8716 -1.4181 15 6 2.2469 0.9747 -2.4586 16 6 2.3369 1.4333 -3.7595 17 6 2.2746 2.7895 -4.0214 18 6 2.1218 3.6880 -2.9828 19 6 2.0256 3.2293 -1.6797 20 9 1.8709 4.1066 -0.6640 21 1 -0.3634 -1.0240 0.0862 22 1 -0.3633 0.5866 0.8438 23 1 -0.3633 0.4373 -0.9300 24 1 1.8306 -0.5262 0.7813 25 1 3.8114 2.3841 0.5636 26 1 4.0287 0.6715 0.1300 27 1 5.0880 0.5814 4.7125 28 1 2.2965 -0.0847 -2.2550 29 1 2.4567 0.7318 -4.5718 30 1 2.3454 3.1467 -5.0381 31 1 2.0737 4.7473 -3.1877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259454284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -26.322257 kcal Electronic energy + Delta-G solvation = -15165.503208 eV Core-core repulsion = 12553.955235 eV Total energy + Delta-G solvation = -2611.547973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.45825 -38.91697 -36.15710 -32.71173 -31.17646 -30.25505 -29.31568 -25.48067 -23.65605 -22.21227 -21.84079 -19.73068 -17.34498 -16.83354 -16.08541 -15.42296 -15.23638 -14.79754 -14.22686 -13.89340 -13.77549 -13.43220 -12.71025 -12.66209 -12.38983 -12.06307 -11.67373 -11.57819 -11.29983 -11.01883 -10.72583 -10.40445 -10.06216 -9.80393 -9.27986 -8.60035 -8.58272 -8.23018 -7.88635 -6.11224 -4.10661 1.47486 1.55509 3.29264 3.36815 3.42334 3.92226 4.41240 4.60238 4.82434 5.05493 5.19857 5.27951 5.29985 5.57875 5.70314 5.79856 5.94355 6.15646 6.18050 6.26513 6.33727 6.41161 6.47917 6.68784 6.81759 7.09523 7.17050 7.23796 7.68269 7.74039 8.11417 8.41465 8.89192 9.50765 11.01428 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.009332 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.162764 B = 2999.780452 C = 3359.164499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.687 5.687 3 C 0.135 3.865 4 H 0.053 0.947 5 C -0.008 4.008 6 C -0.526 4.526 7 H 0.071 0.929 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.879 3.121 11 H -0.275 1.275 12 H -0.265 1.265 13 H -0.287 1.287 14 C -0.094 4.094 15 C -0.067 4.067 16 C -0.141 4.141 17 C -0.108 4.108 18 C -0.163 4.163 19 C 0.094 3.906 20 F -0.138 7.138 21 H 0.060 0.940 22 H 0.020 0.980 23 H 0.053 0.947 24 H 0.364 0.636 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.264 0.736 28 H 0.143 0.857 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 2.037 -14.359 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.320 5.320 3 C 0.025 3.975 4 H 0.071 0.929 5 C -0.046 4.046 6 C -0.563 4.563 7 H 0.089 0.911 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.706 3.294 11 H -0.201 1.201 12 H -0.190 1.190 13 H -0.213 1.213 14 C -0.095 4.095 15 C -0.085 4.085 16 C -0.159 4.159 17 C -0.126 4.126 18 C -0.181 4.181 19 C 0.074 3.926 20 F -0.117 7.117 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.186 0.814 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.161 0.839 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.509 1.959 -14.803 15.598 hybrid contribution 0.696 0.730 0.846 1.317 sum -3.813 2.689 -13.957 14.716 Atomic orbital electron populations 1.22174 0.89381 1.00707 0.99816 1.60358 1.06355 1.13957 1.51351 1.20333 0.99019 0.89183 0.88950 0.92924 1.19739 0.91082 0.97394 0.96389 1.20999 0.95542 1.47357 0.92446 0.91070 1.24968 0.99160 0.94231 0.94634 1.69906 1.29781 1.48259 1.05746 0.86783 0.84113 0.79296 0.79206 1.20083 1.18961 1.21331 1.20368 0.99893 0.91047 0.98236 1.21067 0.95871 1.00899 0.90671 1.21221 1.02173 0.95459 0.97059 1.20868 1.00306 0.93161 0.98272 1.21013 1.05268 1.00598 0.91264 1.17680 1.03337 0.86998 0.84581 1.91491 1.92960 1.68284 1.58929 0.92152 0.96169 0.92839 0.81418 0.95889 0.95787 0.92605 0.83897 0.85980 0.85861 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.54 60.06 0.63 1.10 16 2 N -0.69 -12.80 5.44 -115.25 -0.63 -13.42 16 3 C 0.14 2.79 1.99 -68.87 -0.14 2.65 16 4 H 0.05 1.17 7.31 -51.93 -0.38 0.79 16 5 C -0.01 -0.20 3.61 -27.88 -0.10 -0.30 16 6 C -0.53 -14.58 8.66 -34.44 -0.30 -14.88 16 7 H 0.07 2.10 7.76 -52.49 -0.41 1.69 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 10 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C -0.09 -1.72 4.94 -104.56 -0.52 -2.24 16 15 C -0.07 -1.06 9.32 -39.59 -0.37 -1.43 16 16 C -0.14 -1.86 10.05 -39.57 -0.40 -2.25 16 17 C -0.11 -1.36 10.04 -39.59 -0.40 -1.76 16 18 C -0.16 -2.35 10.03 -39.52 -0.40 -2.74 16 19 C 0.09 1.66 7.24 -39.42 -0.29 1.38 16 20 F -0.14 -2.67 16.54 2.25 0.04 -2.63 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.02 0.33 7.93 -51.93 -0.41 -0.08 16 23 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 24 H 0.36 7.39 7.30 -39.29 -0.29 7.10 16 25 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 26 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.14 2.24 7.29 -52.49 -0.38 1.85 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 267.16 15.07 4.03 4.03 Total: -1.00 -29.73 267.16 -6.74 -36.47 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.92 Total: 3.40 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.36 Total: -18.49 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.15 Total: -39.91 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.73 -6.74 -36.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259454284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.150 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds