Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 110.99975 * 2 1 4 4 H 1.08999 * 109.47641 * 33.52789 * 3 2 1 5 5 C 1.53001 * 109.46940 * 153.52294 * 3 2 1 6 6 C 1.50700 * 109.47100 * 295.00224 * 5 3 2 7 7 H 1.08000 * 120.00256 * 359.97438 * 6 5 3 8 8 C 1.37889 * 119.99924 * 180.02562 * 6 5 3 9 9 N 1.31510 * 119.99461 * 179.72232 * 8 6 5 10 10 Si 1.86798 * 120.00104 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47211 * 269.72653 * 10 8 6 12 12 H 1.48503 * 109.46912 * 29.72786 * 10 8 6 13 13 H 1.48500 * 109.47167 * 149.72533 * 10 8 6 14 14 C 1.50701 * 109.47333 * 273.51815 * 3 2 1 15 15 C 1.38216 * 120.01324 * 333.86987 * 14 3 2 16 16 C 1.38225 * 120.02559 * 179.97438 * 15 14 3 17 17 C 1.38273 * 120.04830 * 0.02562 * 16 15 14 18 18 C 1.38176 * 120.02649 * 359.97438 * 17 16 15 19 19 C 1.38436 * 120.01043 * 153.58282 * 14 3 2 20 20 F 1.35105 * 120.02728 * 0.02562 * 19 14 3 21 21 H 1.08996 * 109.47313 * 184.81134 * 1 2 3 22 22 H 1.09000 * 109.47143 * 304.80987 * 1 2 3 23 23 H 1.09002 * 109.46971 * 64.81443 * 1 2 3 24 24 H 1.00900 * 110.99846 * 123.95965 * 2 1 3 25 25 H 1.09000 * 109.47326 * 174.99912 * 5 3 2 26 26 H 1.08997 * 109.47435 * 54.99700 * 5 3 2 27 27 H 0.97002 * 119.99475 * 180.27214 * 9 8 6 28 28 H 1.07998 * 119.98600 * 359.94877 * 15 14 3 29 29 H 1.07994 * 119.97905 * 179.97438 * 16 15 14 30 30 H 1.07998 * 119.98576 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.00951 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3259 2.0176 0.5676 5 6 3.3836 1.3847 0.6431 6 6 3.2678 1.0021 2.0961 7 1 2.3007 0.7727 2.5188 8 6 4.3964 0.9458 2.8863 9 7 4.2946 0.6172 4.1556 10 14 6.0690 1.3432 2.1556 11 1 6.6864 0.1002 1.6273 12 1 5.9067 2.3231 1.0517 13 1 6.9435 1.9221 3.2069 14 6 2.0941 1.8716 -1.4181 15 6 2.2469 0.9747 -2.4586 16 6 2.3369 1.4333 -3.7595 17 6 2.2746 2.7895 -4.0214 18 6 2.1218 3.6880 -2.9828 19 6 2.0256 3.2293 -1.6797 20 9 1.8709 4.1066 -0.6640 21 1 -0.3634 -1.0240 0.0862 22 1 -0.3633 0.5866 0.8438 23 1 -0.3633 0.4373 -0.9300 24 1 1.8306 -0.5262 0.7813 25 1 3.8114 2.3841 0.5636 26 1 4.0287 0.6715 0.1300 27 1 5.0880 0.5814 4.7125 28 1 2.2965 -0.0847 -2.2550 29 1 2.4567 0.7318 -4.5718 30 1 2.3454 3.1467 -5.0381 31 1 2.0737 4.7473 -3.1877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259454284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -45.189886 kcal Electronic energy + Delta-G solvation = -15166.321370 eV Core-core repulsion = 12553.955235 eV Total energy + Delta-G solvation = -2612.366135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.83731 -40.17365 -37.64817 -34.82341 -32.61908 -31.47373 -30.95203 -27.17347 -25.06160 -23.62099 -23.32875 -21.26477 -19.17543 -18.37577 -17.41715 -16.84681 -16.61307 -16.38370 -16.02167 -15.46893 -14.98714 -14.80849 -14.60556 -13.99775 -13.91853 -13.51169 -13.31978 -13.09222 -12.70575 -12.51873 -12.29419 -12.05985 -11.85413 -11.64910 -11.32916 -10.81539 -9.76072 -9.49325 -9.42746 -8.34245 -6.38491 0.29104 0.40925 1.32130 1.34235 1.46042 2.31974 2.76866 2.98540 3.31857 3.49068 3.85892 4.04779 4.19636 4.35788 4.45055 4.49901 4.57707 4.67873 4.71124 4.96187 5.03081 5.15979 5.20802 5.24876 5.32633 5.53679 5.56972 5.64150 6.08667 6.15156 6.18805 6.48479 6.65983 7.26147 8.81555 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.009332 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.162764 B = 2999.780452 C = 3359.164499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.680 5.680 3 C 0.144 3.856 4 H 0.022 0.978 5 C 0.001 3.999 6 C -0.528 4.528 7 H 0.037 0.963 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.945 3.055 11 H -0.260 1.260 12 H -0.259 1.259 13 H -0.282 1.282 14 C -0.120 4.120 15 C -0.075 4.075 16 C -0.128 4.128 17 C -0.092 4.092 18 C -0.159 4.159 19 C 0.060 3.940 20 F -0.159 7.159 21 H 0.085 0.915 22 H 0.005 0.995 23 H 0.065 0.935 24 H 0.351 0.649 25 H 0.010 0.990 26 H 0.028 0.972 27 H 0.268 0.732 28 H 0.142 0.858 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 2.108 -17.915 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.311 5.311 3 C 0.033 3.967 4 H 0.040 0.960 5 C -0.037 4.037 6 C -0.565 4.565 7 H 0.056 0.944 8 C -0.183 4.183 9 N -0.583 5.583 10 Si 0.768 3.232 11 H -0.185 1.185 12 H -0.183 1.183 13 H -0.208 1.208 14 C -0.122 4.122 15 C -0.093 4.093 16 C -0.146 4.146 17 C -0.110 4.110 18 C -0.178 4.178 19 C 0.040 3.960 20 F -0.138 7.138 21 H 0.103 0.897 22 H 0.024 0.976 23 H 0.084 0.916 24 H 0.170 0.830 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.177 0.823 30 H 0.185 0.815 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.834 2.031 -18.381 18.886 hybrid contribution 0.378 0.700 1.896 2.056 sum -3.456 2.731 -16.485 17.063 Atomic orbital electron populations 1.22238 0.87597 1.02143 0.99804 1.60445 1.07956 1.12509 1.50234 1.20036 0.96275 0.89683 0.90655 0.95991 1.19582 0.93538 0.96266 0.94293 1.21232 0.94202 1.46652 0.94462 0.94434 1.25859 1.03354 0.94179 0.94951 1.70039 1.31083 1.49884 1.07271 0.85740 0.79150 0.79707 0.78577 1.18470 1.18298 1.20797 1.20181 1.03006 0.91962 0.97055 1.21160 0.96261 1.00438 0.91467 1.21639 0.99783 0.96628 0.96578 1.21402 0.97383 0.92528 0.99698 1.21363 1.04008 1.02378 0.90028 1.18116 1.05496 0.86723 0.85630 1.91432 1.93409 1.68808 1.60126 0.89666 0.97631 0.91616 0.82973 0.97218 0.95328 0.92347 0.84047 0.82252 0.81464 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 10.54 127.69 1.35 2.36 16 2 N -0.68 -25.81 5.44 -518.54 -2.82 -28.62 16 3 C 0.14 6.13 1.99 44.17 0.09 6.22 16 4 H 0.02 1.05 7.31 -2.39 -0.02 1.03 16 5 C 0.00 0.04 3.61 29.85 0.11 0.15 16 6 C -0.53 -30.45 8.66 25.60 0.22 -30.23 16 7 H 0.04 2.35 7.76 -2.91 -0.02 2.33 16 8 C 0.01 0.85 5.47 84.66 0.46 1.32 16 9 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 10 Si 0.94 45.26 27.47 68.60 1.88 47.14 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 C -0.12 -4.37 4.94 -19.82 -0.10 -4.47 16 15 C -0.08 -2.22 9.32 22.26 0.21 -2.01 16 16 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 17 C -0.09 -1.86 10.04 22.26 0.22 -1.63 16 18 C -0.16 -4.11 10.03 22.31 0.22 -3.89 16 19 C 0.06 2.09 7.24 22.37 0.16 2.25 16 20 F -0.16 -6.32 16.54 44.97 0.74 -5.58 16 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.01 0.18 7.93 -2.39 -0.02 0.16 16 23 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 24 H 0.35 14.77 7.30 -89.69 -0.65 14.12 16 25 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 26 H 0.03 1.37 7.57 -2.39 -0.02 1.36 16 27 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.14 4.15 7.29 -2.91 -0.02 4.13 16 29 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.87 267.16 3.69 -63.18 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.41 Total: 14.94 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.17 Total: -32.50 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -2.52 Total: -87.19 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.74 Total: -5.58 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -66.87 3.69 -63.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259454284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.991 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds