Wall clock time and date at job start Mon Mar 30 2020 02:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99952 * 2 1 4 4 H 1.08989 * 109.47632 * 324.92750 * 3 2 1 5 5 C 1.53004 * 109.46894 * 204.92652 * 3 2 1 6 6 C 1.50701 * 109.47006 * 65.00118 * 5 3 2 7 7 H 1.08000 * 119.99579 * 0.02562 * 6 5 3 8 8 C 1.37871 * 120.00068 * 179.97438 * 6 5 3 9 9 N 1.31517 * 119.99984 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00142 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47042 * 89.99895 * 10 8 6 12 12 H 1.48502 * 109.47565 * 210.00193 * 10 8 6 13 13 H 1.48500 * 109.47100 * 330.00279 * 10 8 6 14 14 C 1.50707 * 109.46844 * 84.93244 * 3 2 1 15 15 C 1.38248 * 119.96873 * 226.83391 * 14 3 2 16 16 C 1.38192 * 120.02289 * 179.97438 * 15 14 3 17 17 C 1.38466 * 119.97726 * 0.02562 * 16 15 14 18 18 F 1.35096 * 120.02650 * 180.02562 * 17 16 15 19 19 C 1.38454 * 119.94509 * 359.97438 * 17 16 15 20 20 C 1.38197 * 119.97646 * 0.02562 * 19 17 16 21 21 H 1.09002 * 109.46986 * 304.28402 * 1 2 3 22 22 H 1.09005 * 109.46957 * 64.28039 * 1 2 3 23 23 H 1.08997 * 109.47615 * 184.28787 * 1 2 3 24 24 H 1.00897 * 110.99910 * 123.95415 * 2 1 3 25 25 H 1.09002 * 109.47153 * 185.00440 * 5 3 2 26 26 H 1.09000 * 109.47270 * 305.00471 * 5 3 2 27 27 H 0.97008 * 119.99838 * 179.97438 * 9 8 6 28 28 H 1.08000 * 119.98655 * 0.28099 * 15 14 3 29 29 H 1.07998 * 120.01506 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.01162 * 179.97438 * 19 17 16 31 31 H 1.08004 * 119.98976 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3406 2.0120 -0.5904 5 6 3.3995 1.3787 -0.6080 6 6 3.3203 0.9820 -2.0597 7 1 2.3642 0.7486 -2.5042 8 6 4.4683 0.9182 -2.8205 9 7 4.3993 0.5716 -4.0873 10 14 6.1219 1.3242 -2.0521 11 1 6.7231 0.0882 -1.4897 12 1 7.0247 1.8866 -3.0883 13 1 5.9323 2.3203 -0.9672 14 6 2.0583 1.8853 1.4154 15 6 1.5741 3.1451 1.7147 16 6 1.6307 3.6173 3.0123 17 6 2.1730 2.8283 4.0126 18 9 2.2283 3.2886 5.2815 19 6 2.6576 1.5667 3.7115 20 6 2.6000 1.0967 2.4132 21 1 -0.3633 0.5789 0.8491 22 1 -0.3633 0.4460 -0.9259 23 1 -0.3634 -1.0247 0.0768 24 1 1.8306 -0.5261 0.7813 25 1 3.8252 2.3789 -0.5272 26 1 4.0313 0.6706 -0.0718 27 1 5.2070 0.5270 -4.6227 28 1 1.1470 3.7586 0.9352 29 1 1.2520 4.6013 3.2461 30 1 3.0812 0.9506 4.4908 31 1 2.9783 0.1128 2.1780 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259457846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:08 Heat of formation + Delta-G solvation = -23.245051 kcal Electronic energy + Delta-G solvation = -14844.542607 eV Core-core repulsion = 12233.128071 eV Total energy + Delta-G solvation = -2611.414536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.84246 -39.36218 -35.98227 -32.65826 -31.12979 -30.89831 -29.10216 -25.42667 -23.72209 -22.72161 -21.83059 -19.82869 -17.71717 -16.87981 -16.19073 -15.64915 -15.54192 -14.71535 -14.19157 -14.12449 -13.64392 -13.43220 -13.20763 -12.93184 -12.40046 -12.22115 -11.85523 -11.74616 -11.19205 -11.03805 -10.81148 -10.23639 -10.10384 -9.73287 -9.10548 -9.03040 -8.45292 -8.35234 -7.80147 -5.93459 -3.88263 1.24737 1.30568 3.35305 3.42972 3.45645 3.68716 4.31861 4.52486 4.77070 4.84793 4.91375 5.06393 5.38819 5.40731 5.46174 5.71316 5.81550 5.89831 6.05809 6.14836 6.17379 6.27966 6.32463 6.54808 6.66806 6.98411 7.11104 7.20598 7.69290 7.84541 7.97712 8.67526 9.17169 9.68860 11.20376 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.007861 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.451009 B = 3560.844001 C = 4112.394925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.662 5.662 3 C 0.138 3.862 4 H 0.083 0.917 5 C 0.003 3.997 6 C -0.492 4.492 7 H 0.078 0.922 8 C 0.063 3.937 9 N -0.907 5.907 10 Si 0.873 3.127 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.268 1.268 14 C -0.106 4.106 15 C -0.087 4.087 16 C -0.153 4.153 17 C 0.080 3.920 18 F -0.147 7.147 19 C -0.151 4.151 20 C -0.091 4.091 21 H 0.011 0.989 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.331 0.669 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.260 0.740 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 3.018 14.471 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.291 5.291 3 C 0.028 3.972 4 H 0.101 0.899 5 C -0.035 4.035 6 C -0.530 4.530 7 H 0.096 0.904 8 C -0.137 4.137 9 N -0.547 5.547 10 Si 0.701 3.299 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.193 1.193 14 C -0.108 4.108 15 C -0.106 4.106 16 C -0.171 4.171 17 C 0.061 3.939 18 F -0.126 7.126 19 C -0.170 4.170 20 C -0.109 4.109 21 H 0.030 0.970 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.150 0.850 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.629 2.915 13.653 15.053 hybrid contribution 0.846 0.555 1.522 1.827 sum -4.783 3.470 15.174 16.284 Atomic orbital electron populations 1.22203 0.89095 1.00702 1.00027 1.60529 1.06258 1.13391 1.48939 1.20779 1.00117 0.88514 0.87809 0.89927 1.19614 0.90129 0.96401 0.97347 1.20978 0.95575 1.44325 0.92137 0.90386 1.24983 0.98674 0.95287 0.94752 1.69909 1.28449 1.49503 1.06823 0.86899 0.84808 0.79034 0.79203 1.20472 1.21582 1.19254 1.21340 0.96362 0.94586 0.98558 1.21015 0.98581 0.95567 0.95446 1.21113 1.02642 1.00463 0.92931 1.17684 1.02968 0.94233 0.79047 1.91462 1.94722 1.89082 1.37304 1.21085 1.02809 0.95014 0.98081 1.20899 0.98095 1.00488 0.91434 0.97049 0.91738 0.92232 0.85043 0.96300 0.96781 0.92985 0.84964 0.85121 0.85079 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.48 60.07 0.63 1.07 16 2 N -0.66 -11.82 6.31 -115.24 -0.73 -12.55 16 3 C 0.14 2.57 2.17 -68.86 -0.15 2.42 16 4 H 0.08 1.58 7.64 -51.94 -0.40 1.18 16 5 C 0.00 0.06 3.62 -27.88 -0.10 -0.04 16 6 C -0.49 -13.73 9.39 -34.44 -0.32 -14.06 16 7 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 8 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 9 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 10 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 14 C -0.11 -1.68 4.65 -104.61 -0.49 -2.17 16 15 C -0.09 -1.24 9.67 -39.59 -0.38 -1.63 16 16 C -0.15 -2.01 10.03 -39.51 -0.40 -2.41 16 17 C 0.08 1.10 7.30 -39.42 -0.29 0.81 16 18 F -0.15 -2.03 17.27 2.25 0.04 -1.99 16 19 C -0.15 -2.02 10.03 -39.52 -0.40 -2.41 16 20 C -0.09 -1.31 8.95 -39.60 -0.35 -1.67 16 21 H 0.01 0.15 7.93 -51.93 -0.41 -0.26 16 22 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.33 5.28 6.77 -39.29 -0.27 5.01 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 28 H 0.13 1.68 7.99 -52.49 -0.42 1.26 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.79 6.91 -52.48 -0.36 1.43 16 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -30.76 268.20 -6.79 -37.55 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.90 Total: 1.48 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.35 Total: -18.34 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.05 Total: -39.82 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.76 -6.79 -37.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259457846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.300 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds