Wall clock time and date at job start Mon Mar 30 2020 02:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99952 * 2 1 4 4 H 1.08989 * 109.47632 * 324.92750 * 3 2 1 5 5 C 1.53004 * 109.46894 * 204.92652 * 3 2 1 6 6 C 1.50701 * 109.47006 * 65.00118 * 5 3 2 7 7 H 1.08000 * 119.99579 * 0.02562 * 6 5 3 8 8 C 1.37871 * 120.00068 * 179.97438 * 6 5 3 9 9 N 1.31517 * 119.99984 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00142 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47042 * 89.99895 * 10 8 6 12 12 H 1.48502 * 109.47565 * 210.00193 * 10 8 6 13 13 H 1.48500 * 109.47100 * 330.00279 * 10 8 6 14 14 C 1.50707 * 109.46844 * 84.93244 * 3 2 1 15 15 C 1.38248 * 119.96873 * 226.83391 * 14 3 2 16 16 C 1.38192 * 120.02289 * 179.97438 * 15 14 3 17 17 C 1.38466 * 119.97726 * 0.02562 * 16 15 14 18 18 F 1.35096 * 120.02650 * 180.02562 * 17 16 15 19 19 C 1.38454 * 119.94509 * 359.97438 * 17 16 15 20 20 C 1.38197 * 119.97646 * 0.02562 * 19 17 16 21 21 H 1.09002 * 109.46986 * 304.28402 * 1 2 3 22 22 H 1.09005 * 109.46957 * 64.28039 * 1 2 3 23 23 H 1.08997 * 109.47615 * 184.28787 * 1 2 3 24 24 H 1.00897 * 110.99910 * 123.95415 * 2 1 3 25 25 H 1.09002 * 109.47153 * 185.00440 * 5 3 2 26 26 H 1.09000 * 109.47270 * 305.00471 * 5 3 2 27 27 H 0.97008 * 119.99838 * 179.97438 * 9 8 6 28 28 H 1.08000 * 119.98655 * 0.28099 * 15 14 3 29 29 H 1.07998 * 120.01506 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.01162 * 179.97438 * 19 17 16 31 31 H 1.08004 * 119.98976 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3406 2.0120 -0.5904 5 6 3.3995 1.3787 -0.6080 6 6 3.3203 0.9820 -2.0597 7 1 2.3642 0.7486 -2.5042 8 6 4.4683 0.9182 -2.8205 9 7 4.3993 0.5716 -4.0873 10 14 6.1219 1.3242 -2.0521 11 1 6.7231 0.0882 -1.4897 12 1 7.0247 1.8866 -3.0883 13 1 5.9323 2.3203 -0.9672 14 6 2.0583 1.8853 1.4154 15 6 1.5741 3.1451 1.7147 16 6 1.6307 3.6173 3.0123 17 6 2.1730 2.8283 4.0126 18 9 2.2283 3.2886 5.2815 19 6 2.6576 1.5667 3.7115 20 6 2.6000 1.0967 2.4132 21 1 -0.3633 0.5789 0.8491 22 1 -0.3633 0.4460 -0.9259 23 1 -0.3634 -1.0247 0.0768 24 1 1.8306 -0.5261 0.7813 25 1 3.8252 2.3789 -0.5272 26 1 4.0313 0.6706 -0.0718 27 1 5.2070 0.5270 -4.6227 28 1 1.1470 3.7586 0.9352 29 1 1.2520 4.6013 3.2461 30 1 3.0812 0.9506 4.4908 31 1 2.9783 0.1128 2.1780 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259457846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:08 Heat of formation + Delta-G solvation = -42.934164 kcal Electronic energy + Delta-G solvation = -14845.396391 eV Core-core repulsion = 12233.128071 eV Total energy + Delta-G solvation = -2612.268320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.89699 -40.53339 -37.33944 -34.73519 -32.45138 -32.08767 -30.69014 -26.98949 -25.05115 -23.93068 -23.32016 -21.30646 -19.03213 -18.61660 -17.37753 -17.01862 -16.59942 -16.27263 -15.73959 -15.51701 -15.15654 -14.47310 -14.43986 -14.31625 -14.09448 -13.45135 -13.40507 -13.29088 -12.74660 -12.50119 -12.18934 -11.79246 -11.76357 -11.70450 -11.20049 -10.66982 -10.07924 -9.53836 -9.13475 -8.16704 -6.15913 0.13796 0.26401 1.38942 1.40437 1.51080 2.42949 2.59605 3.16917 3.26526 3.52979 3.75948 3.80874 3.97414 4.29531 4.34288 4.50700 4.62146 4.67966 4.90002 4.96417 5.01594 5.07123 5.12926 5.20866 5.28425 5.39905 5.56679 5.74279 5.92336 6.27434 6.47794 6.68560 6.91973 7.44763 9.00579 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.007861 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.451009 B = 3560.844001 C = 4112.394925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.687 5.687 3 C 0.148 3.852 4 H 0.070 0.930 5 C 0.006 3.994 6 C -0.491 4.491 7 H 0.037 0.963 8 C -0.001 4.001 9 N -0.957 5.957 10 Si 0.942 3.058 11 H -0.270 1.270 12 H -0.289 1.289 13 H -0.249 1.249 14 C -0.121 4.121 15 C -0.092 4.092 16 C -0.148 4.148 17 C 0.075 3.925 18 F -0.147 7.147 19 C -0.148 4.148 20 C -0.095 4.095 21 H 0.027 0.973 22 H 0.050 0.950 23 H 0.076 0.924 24 H 0.341 0.659 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.261 0.739 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 3.607 16.984 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.318 5.318 3 C 0.038 3.962 4 H 0.088 0.912 5 C -0.031 4.031 6 C -0.529 4.529 7 H 0.055 0.945 8 C -0.196 4.196 9 N -0.600 5.600 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.215 1.215 13 H -0.173 1.173 14 C -0.123 4.123 15 C -0.110 4.110 16 C -0.167 4.167 17 C 0.055 3.945 18 F -0.125 7.125 19 C -0.166 4.166 20 C -0.113 4.113 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.095 0.905 24 H 0.161 0.839 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.160 0.840 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.213 3.506 16.195 17.371 hybrid contribution 0.608 0.359 0.747 1.028 sum -4.605 3.864 16.942 17.976 Atomic orbital electron populations 1.22167 0.87385 1.01985 0.99936 1.60427 1.08102 1.13269 1.49983 1.20367 0.97171 0.89122 0.89518 0.91220 1.19517 0.93303 0.95919 0.94406 1.21256 0.93831 1.43112 0.94704 0.94477 1.25904 1.03078 0.95499 0.95149 1.70076 1.29609 1.51635 1.08643 0.85783 0.79507 0.79420 0.78620 1.19557 1.21546 1.17320 1.21038 0.98579 0.95694 0.97010 1.21150 0.98446 0.95074 0.96355 1.21328 1.01845 1.01370 0.92167 1.17875 1.02870 0.94542 0.79171 1.91469 1.94698 1.89085 1.37281 1.21292 1.02130 0.95105 0.98093 1.20987 0.97987 1.00704 0.91622 0.95491 0.93118 0.90494 0.83899 0.96383 0.96364 0.92998 0.83971 0.82777 0.82805 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 10.48 127.69 1.34 2.35 16 2 N -0.69 -24.18 6.31 -518.51 -3.27 -27.45 16 3 C 0.15 5.47 2.17 44.17 0.10 5.56 16 4 H 0.07 2.69 7.64 -2.39 -0.02 2.67 16 5 C 0.01 0.29 3.62 29.85 0.11 0.40 16 6 C -0.49 -27.95 9.39 25.60 0.24 -27.71 16 7 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 8 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 9 N -0.96 -60.82 13.96 21.45 0.30 -60.52 16 10 Si 0.94 44.76 27.47 68.60 1.88 46.65 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 14 C -0.12 -3.61 4.65 -19.86 -0.09 -3.71 16 15 C -0.09 -2.40 9.67 22.26 0.22 -2.18 16 16 C -0.15 -3.46 10.03 22.31 0.22 -3.23 16 17 C 0.07 1.82 7.30 22.38 0.16 1.99 16 18 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 19 C -0.15 -3.47 10.03 22.31 0.22 -3.25 16 20 C -0.09 -2.50 8.95 22.26 0.20 -2.30 16 21 H 0.03 0.69 7.93 -2.39 -0.02 0.68 16 22 H 0.05 1.58 8.13 -2.38 -0.02 1.56 16 23 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.34 10.48 6.77 -89.70 -0.61 9.87 16 25 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 26 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 27 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 28 H 0.14 3.35 7.99 -2.91 -0.02 3.32 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.14 3.44 6.91 -2.91 -0.02 3.42 16 Total: -1.00 -66.36 268.20 3.33 -63.04 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.46 Total: 12.80 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 3.18 Total: -31.70 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.97 Total: -87.97 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -66.36 3.33 -63.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259457846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.103 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds