Wall clock time and date at job start Mon Mar 30 2020 02:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 110.99749 * 2 1 4 4 H 1.09004 * 109.47275 * 182.74919 * 3 2 1 5 5 C 1.53001 * 109.47321 * 302.75004 * 3 2 1 6 6 C 1.50695 * 109.47205 * 294.99927 * 5 3 2 7 7 H 1.08003 * 119.99982 * 0.02562 * 6 5 3 8 8 C 1.37877 * 120.00344 * 179.97438 * 6 5 3 9 9 N 1.31514 * 119.99641 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00041 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46971 * 90.00729 * 10 8 6 12 12 H 1.48503 * 109.47208 * 209.99939 * 10 8 6 13 13 H 1.48497 * 109.47712 * 330.00423 * 10 8 6 14 14 C 1.50703 * 109.47072 * 62.75132 * 3 2 1 15 15 C 1.38246 * 119.97301 * 220.28527 * 14 3 2 16 16 C 1.38204 * 120.02443 * 179.76434 * 15 14 3 17 17 C 1.38462 * 119.97117 * 0.51503 * 16 15 14 18 18 F 1.35100 * 120.02131 * 179.76289 * 17 16 15 19 19 C 1.38457 * 119.95083 * 359.74465 * 17 16 15 20 20 C 1.38199 * 119.97262 * 359.97438 * 19 17 16 21 21 H 1.09002 * 109.47169 * 186.67264 * 1 2 3 22 22 H 1.09003 * 109.47402 * 306.66757 * 1 2 3 23 23 H 1.09001 * 109.47567 * 66.67271 * 1 2 3 24 24 H 1.00896 * 111.00274 * 236.04841 * 2 1 3 25 25 H 1.08999 * 109.46761 * 54.99867 * 5 3 2 26 26 H 1.09003 * 109.47118 * 174.99682 * 5 3 2 27 27 H 0.96999 * 119.99922 * 179.97438 * 9 8 6 28 28 H 1.07999 * 119.99032 * 0.02562 * 15 14 3 29 29 H 1.08000 * 120.00969 * 180.25824 * 16 15 14 30 30 H 1.07994 * 120.01464 * 179.97438 * 19 17 16 31 31 H 1.08002 * 119.98329 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 1 3.0839 1.3429 -0.0493 5 6 1.4496 2.1273 -1.2132 6 6 1.9775 1.4977 -2.4764 7 1 2.6361 0.6435 -2.4197 8 6 1.6190 2.0113 -3.7047 9 7 0.8166 3.0510 -3.7738 10 14 2.2740 1.2312 -5.2705 11 1 1.3412 0.1672 -5.7211 12 1 2.3911 2.2671 -6.3281 13 1 3.6102 0.6392 -5.0073 14 6 1.5680 2.0735 1.2632 15 6 1.1682 3.3961 1.2168 16 6 0.7715 4.0396 2.3738 17 6 0.7847 3.3622 3.5813 18 9 0.4016 3.9916 4.7137 19 6 1.1904 2.0392 3.6273 20 6 1.5811 1.3961 2.4682 21 1 -0.3633 -1.0207 0.1194 22 1 -0.3634 0.6137 0.8243 23 1 -0.3634 0.4069 -0.9436 24 1 1.8306 -0.5261 -0.7813 25 1 0.3606 2.0796 -1.2111 26 1 1.7678 3.1687 -1.1658 27 1 0.5647 3.4126 -4.6379 28 1 1.1620 3.9255 0.2755 29 1 0.4553 5.0716 2.3366 30 1 1.2014 1.5100 4.5687 31 1 1.8972 0.3640 2.5038 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259457849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:11 Heat of formation + Delta-G solvation = -27.436342 kcal Electronic energy + Delta-G solvation = -14957.246207 eV Core-core repulsion = 12345.649924 eV Total energy + Delta-G solvation = -2611.596284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.62508 -39.13880 -36.01899 -32.71453 -30.97999 -30.34950 -28.37189 -25.49268 -23.84759 -22.62566 -21.82165 -19.31566 -17.41136 -16.54283 -15.96357 -15.36842 -15.18674 -14.93544 -14.55117 -14.11746 -13.21228 -13.13934 -13.12639 -12.56679 -12.22408 -11.92399 -11.57437 -11.29046 -10.99661 -10.89299 -10.64908 -10.56845 -10.16016 -9.81302 -9.18287 -8.73218 -8.47360 -8.11684 -7.58891 -6.12454 -4.16102 1.52224 1.61582 3.24208 3.31749 3.34085 3.98284 4.35539 4.58002 5.00954 5.16008 5.19014 5.25813 5.42858 5.76614 5.79639 6.02775 6.22061 6.27949 6.34386 6.48070 6.49250 6.58509 6.63712 6.71053 7.04437 7.25832 7.37788 7.56485 7.76856 7.89019 8.12824 8.27054 8.89838 9.49132 10.98440 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.046276 B = 0.006787 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.918171 B = 4124.244903 C = 4491.602299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.681 5.681 3 C 0.119 3.881 4 H 0.083 0.917 5 C -0.007 4.007 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.070 4.070 15 C -0.087 4.087 16 C -0.158 4.158 17 C 0.077 3.923 18 F -0.151 7.151 19 C -0.165 4.165 20 C -0.074 4.074 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.347 0.653 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.261 0.739 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -1.824 10.327 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.311 5.311 3 C 0.009 3.991 4 H 0.101 0.899 5 C -0.045 4.045 6 C -0.563 4.563 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.530 5.530 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.071 4.071 15 C -0.105 4.105 16 C -0.177 4.177 17 C 0.058 3.942 18 F -0.129 7.129 19 C -0.184 4.184 20 C -0.092 4.092 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.165 0.835 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.107 -1.764 10.925 11.067 hybrid contribution -0.045 0.134 -1.681 1.687 sum 0.062 -1.630 9.244 9.387 Atomic orbital electron populations 1.22128 0.89256 1.00122 1.00946 1.60783 1.07516 1.13594 1.49238 1.20633 0.98896 0.88199 0.91334 0.89886 1.19844 0.97201 0.96105 0.91393 1.21132 1.29390 1.14894 0.90887 0.92607 1.24991 0.94986 0.94919 0.99226 1.69952 1.34758 1.23217 1.25055 0.86600 0.79386 0.78996 0.83071 1.20691 1.21228 1.19798 1.20293 0.97339 0.93742 0.95716 1.21369 0.96072 0.94805 0.98259 1.21117 1.04212 1.00841 0.91554 1.17735 1.02490 0.91841 0.82125 1.91442 1.89233 1.82522 1.49738 1.21085 1.04020 0.93332 0.99924 1.20980 0.97299 1.00288 0.90644 0.93085 0.92797 0.94221 0.83454 0.95599 0.95815 0.92886 0.83829 0.85355 0.85572 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.77 60.06 0.59 1.04 16 2 N -0.68 -12.24 6.03 -115.24 -0.70 -12.93 16 3 C 0.12 2.30 2.88 -68.86 -0.20 2.11 16 4 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 5 C -0.01 -0.18 3.33 -27.88 -0.09 -0.27 16 6 C -0.52 -13.66 8.59 -34.44 -0.30 -13.95 16 7 H 0.06 1.40 7.15 -52.48 -0.38 1.03 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 10 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 C -0.07 -1.23 4.33 -104.62 -0.45 -1.69 16 15 C -0.09 -1.51 9.11 -39.59 -0.36 -1.87 16 16 C -0.16 -2.49 10.03 -39.51 -0.40 -2.88 16 17 C 0.08 1.19 7.30 -39.42 -0.29 0.91 16 18 F -0.15 -2.30 17.27 2.25 0.04 -2.26 16 19 C -0.16 -2.40 10.03 -39.52 -0.40 -2.80 16 20 C -0.07 -1.15 8.73 -39.59 -0.35 -1.49 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.94 6.59 -51.93 -0.34 0.60 16 23 H 0.04 0.80 6.54 -51.93 -0.34 0.46 16 24 H 0.35 6.37 7.81 -39.29 -0.31 6.07 16 25 H 0.03 0.66 6.24 -51.93 -0.32 0.34 16 26 H 0.02 0.60 6.36 -51.93 -0.33 0.27 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.14 2.66 5.85 -52.49 -0.31 2.35 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.14 2.00 7.73 -52.49 -0.41 1.60 16 LS Contribution 261.98 15.07 3.95 3.95 Total: -1.00 -27.43 261.98 -6.89 -34.32 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.56 Total: 5.32 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.34 Total: -19.35 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.04 Total: -37.71 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.43 -6.89 -34.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259457849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.879 kcal (2) G-P(sol) polarization free energy of solvation -27.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds