Wall clock time and date at job start Mon Mar 30 2020 03:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30254 * 125.62141 * 2 1 4 4 C 1.34478 * 108.70109 * 180.18928 * 3 2 1 5 5 C 1.50697 * 126.16301 * 179.82587 * 4 3 2 6 6 C 1.52997 * 109.47466 * 59.69039 * 5 4 3 7 7 C 1.53006 * 109.47239 * 299.68751 * 5 4 3 8 8 C 1.34328 * 107.66976 * 359.56415 * 4 3 2 9 9 C 1.50699 * 126.44506 * 180.28618 * 8 4 3 10 10 C 1.52999 * 109.47149 * 89.99516 * 9 8 4 11 11 C 1.50699 * 109.47149 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00010 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00339 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99887 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00090 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47006 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46865 * 120.00117 * 15 13 11 18 18 H 1.48501 * 109.46659 * 239.99893 * 15 13 11 19 19 O 1.33964 * 125.61721 * 179.70929 * 2 1 3 20 20 H 1.09006 * 109.47084 * 180.31624 * 1 2 3 21 21 H 1.09005 * 109.47151 * 300.31675 * 1 2 3 22 22 H 1.09000 * 109.47013 * 60.31794 * 1 2 3 23 23 H 1.08998 * 109.46862 * 179.69594 * 5 4 3 24 24 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 25 25 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 26 26 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 27 27 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 28 28 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 29 29 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 30 30 H 1.09003 * 109.46877 * 209.99740 * 9 8 4 31 31 H 1.08997 * 109.46813 * 329.99356 * 9 8 4 32 32 H 1.08993 * 109.47332 * 300.00036 * 10 9 8 33 33 H 1.09002 * 109.47050 * 60.00535 * 10 9 8 34 34 H 0.96993 * 120.00284 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 -0.0042 5 6 4.7570 1.5726 -0.0094 6 6 4.7320 2.4622 1.2351 7 6 4.7312 2.4489 -1.2634 8 6 3.5698 -0.6757 0.0029 9 6 4.7937 -1.5550 0.0077 10 6 5.2078 -1.8448 1.4517 11 6 6.4321 -2.7235 1.4565 12 1 6.8712 -3.0430 0.5229 13 6 6.9917 -3.1197 2.6527 14 7 6.4574 -2.7304 3.7895 15 14 8.5097 -4.2084 2.6585 16 1 8.9122 -4.5039 1.2600 17 1 9.6182 -3.5083 3.3558 18 1 8.2048 -5.4789 3.3644 19 8 2.2872 -1.0890 0.0055 20 1 -0.3633 -1.0277 0.0057 21 1 -0.3634 0.5188 0.8872 22 1 -0.3633 0.5089 -0.8928 23 1 5.6647 0.9692 -0.0066 24 1 4.7504 1.8379 2.1284 25 1 3.8242 3.0656 1.2322 26 1 5.6037 3.1166 1.2315 27 1 5.6028 3.1033 -1.2673 28 1 4.7490 1.8151 -2.1500 29 1 3.8234 3.0523 -1.2663 30 1 4.5695 -2.4925 -0.5012 31 1 5.6080 -1.0469 -0.5089 32 1 5.4320 -0.9074 1.9606 33 1 4.3935 -2.3529 1.9682 34 1 6.8512 -3.0088 4.6311 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259529827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:51 Heat of formation + Delta-G solvation = -35.261873 kcal Electronic energy + Delta-G solvation = -15268.231333 eV Core-core repulsion = 12779.756014 eV Total energy + Delta-G solvation = -2488.475319 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.29804 -37.44128 -36.16219 -34.80078 -33.63967 -31.90098 -28.91351 -28.01443 -26.35990 -24.18342 -23.03638 -21.95041 -20.89850 -18.67459 -17.67481 -17.26064 -16.50310 -16.23680 -15.46470 -14.92186 -14.73329 -14.42505 -14.21546 -14.17468 -13.86642 -13.41555 -13.14048 -13.07600 -12.89364 -12.52453 -12.32800 -12.30615 -12.15030 -11.82839 -11.72938 -11.69436 -11.45981 -11.20337 -10.60596 -9.38373 -8.22695 -6.35887 0.53005 1.41508 1.41664 1.55393 1.68730 1.81612 2.40478 3.11000 3.11931 3.73184 3.84789 4.14889 4.24989 4.26177 4.47515 4.58176 4.65730 4.67191 4.70131 4.80549 4.84367 4.94106 4.97875 4.99772 5.12058 5.17731 5.32662 5.36802 5.41707 5.56899 5.57537 5.75882 6.13326 6.79253 6.80517 7.34326 8.89524 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.007146 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.358765 B = 3917.369794 C = 4415.590373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.167 3.833 3 N -0.495 5.495 4 C -0.018 4.018 5 C -0.019 4.019 6 C -0.132 4.132 7 C -0.127 4.127 8 C -0.052 4.052 9 C -0.018 4.018 10 C 0.039 3.961 11 C -0.542 4.542 12 H 0.071 0.929 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.970 3.030 16 H -0.257 1.257 17 H -0.277 1.277 18 H -0.280 1.280 19 O -0.219 6.219 20 H 0.101 0.899 21 H 0.107 0.893 22 H 0.115 0.885 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.101 0.899 32 H -0.004 1.004 33 H -0.019 1.019 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 7.530 -9.038 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.040 4.040 3 N -0.225 5.225 4 C -0.137 4.137 5 C -0.038 4.038 6 C -0.189 4.189 7 C -0.185 4.185 8 C -0.105 4.105 9 C -0.056 4.056 10 C 0.002 3.998 11 C -0.580 4.580 12 H 0.089 0.911 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.181 1.181 17 H -0.203 1.203 18 H -0.206 1.206 19 O -0.108 6.108 20 H 0.119 0.881 21 H 0.125 0.875 22 H 0.134 0.866 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.014 0.986 33 H 0.000 1.000 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.466 8.095 -8.862 14.135 hybrid contribution 0.818 -1.406 0.637 1.747 sum -6.648 6.689 -8.225 12.513 Atomic orbital electron populations 1.20473 0.77843 1.06027 1.06210 1.27358 0.98201 0.78203 1.00236 1.70179 1.01619 1.30863 1.19859 1.21671 0.93813 0.91809 1.06443 1.19631 0.91511 0.94915 0.97743 1.21685 1.02729 0.98897 0.95619 1.21680 1.02738 0.98975 0.95058 1.23795 0.83790 0.95877 1.06995 1.20178 0.88693 0.97038 0.99670 1.18904 0.94975 0.95330 0.90609 1.21633 1.12087 1.31033 0.93226 0.91130 1.26022 1.00913 0.97744 0.95072 1.70126 1.42394 1.46729 0.98140 0.85323 0.78391 0.78009 0.78872 1.18064 1.20289 1.20596 1.84377 1.17120 1.38725 1.70557 0.88054 0.87483 0.86634 0.90134 0.95261 0.92243 0.89994 0.90080 0.93034 0.92503 0.90775 0.88088 0.98565 1.00031 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.93 10.51 71.24 0.75 -0.19 16 2 C 0.17 5.51 8.34 88.34 0.74 6.24 16 3 N -0.49 -17.95 11.29 -291.99 -3.30 -21.25 16 4 C -0.02 -0.71 5.61 41.26 0.23 -0.47 16 5 C -0.02 -0.62 3.27 -11.54 -0.04 -0.66 16 6 C -0.13 -4.14 9.18 71.98 0.66 -3.48 16 7 C -0.13 -3.31 9.18 71.98 0.66 -2.65 16 8 C -0.05 -2.17 6.64 24.79 0.16 -2.01 16 9 C -0.02 -0.79 5.34 29.85 0.16 -0.63 16 10 C 0.04 2.11 4.96 29.85 0.15 2.26 16 11 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 12 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 13 C 0.00 0.03 5.46 84.65 0.46 0.49 16 14 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 15 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 O -0.22 -8.71 10.78 -3.77 -0.04 -8.75 16 20 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.08 2.76 6.81 -2.39 -0.02 2.75 16 24 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.10 3.95 7.16 -2.39 -0.02 3.94 16 32 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -69.38 291.53 4.20 -65.18 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.06 Total: 7.42 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 4.17 Total: -31.40 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -3.01 Total: -78.22 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.04 Total: -8.75 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.38 4.20 -65.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259529827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.915 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds