Wall clock time and date at job start Mon Mar 30 2020 03:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99678 * 2 1 4 4 C 1.52997 * 109.46791 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47140 * 304.99952 * 4 3 2 6 6 C 1.50706 * 109.47430 * 185.00111 * 4 3 2 7 7 H 1.07999 * 120.00193 * 240.00552 * 6 4 3 8 8 C 1.37879 * 119.99398 * 59.99633 * 6 4 3 9 9 N 1.31514 * 119.99350 * 180.02562 * 8 6 4 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 4 11 11 H 1.48493 * 109.47326 * 270.00340 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00090 * 10 8 6 13 13 H 1.48498 * 109.47210 * 149.99801 * 10 8 6 14 14 C 1.50699 * 109.47592 * 65.00000 * 4 3 2 15 15 N 1.36352 * 125.88698 * 59.68934 * 14 4 3 16 16 H 0.96999 * 125.63555 * 0.02562 * 15 14 4 17 17 C 1.36346 * 108.72565 * 179.83357 * 15 14 4 18 18 C 1.50691 * 125.88843 * 180.18837 * 17 15 14 19 19 C 1.34850 * 108.21661 * 0.43400 * 17 15 14 20 20 C 1.34844 * 125.89737 * 240.00281 * 14 4 3 21 21 C 1.50702 * 126.28756 * 359.97438 * 20 14 4 22 22 H 1.09005 * 109.47015 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46883 * 299.99399 * 1 2 3 24 24 H 1.09003 * 109.47380 * 59.99767 * 1 2 3 25 25 H 1.08994 * 109.47129 * 60.00692 * 3 2 1 26 26 H 1.09001 * 109.47358 * 300.00334 * 3 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 9 8 6 28 28 H 1.09006 * 109.47257 * 270.31194 * 18 17 15 29 29 H 1.08995 * 109.47333 * 30.31011 * 18 17 15 30 30 H 1.09006 * 109.47358 * 150.31322 * 18 17 15 31 31 H 1.08003 * 126.29080 * 179.75519 * 19 17 15 32 32 H 1.09000 * 109.47564 * 90.00041 * 21 20 14 33 33 H 1.09000 * 109.47107 * 210.00284 * 21 20 14 34 34 H 1.09001 * 109.47118 * 329.99729 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8514 0.5682 0.8409 6 6 4.1480 2.5560 0.1232 7 1 4.8000 2.9283 -0.6531 8 6 3.8760 3.3353 1.2277 9 7 4.4103 4.5322 1.3355 10 14 2.7487 2.6912 2.5707 11 1 1.3465 3.0726 2.2652 12 1 2.8556 1.2115 2.6391 13 1 3.1481 3.2771 3.8754 14 6 3.9883 0.5467 -1.2886 15 7 3.7664 1.0332 -2.5429 16 1 3.2894 1.8505 -2.7558 17 6 4.3294 0.1832 -3.4481 18 6 4.3170 0.3525 -4.9454 19 6 4.8947 -0.8379 -2.7726 20 6 4.6778 -0.6068 -1.3998 21 6 5.1332 -1.4867 -0.2643 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 4.2186 5.0806 2.1123 28 1 3.4306 -0.1294 -5.3582 29 1 4.3007 1.4143 -5.1909 30 1 5.2105 -0.1050 -5.3703 31 1 5.4178 -1.6783 -3.2045 32 1 4.3599 -2.2219 -0.0415 33 1 6.0517 -2.0003 -0.5484 34 1 5.3175 -0.8745 0.6185 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259552210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:26 Heat of formation + Delta-G solvation = -34.129068 kcal Electronic energy + Delta-G solvation = -15747.302029 eV Core-core repulsion = 13258.875831 eV Total energy + Delta-G solvation = -2488.426197 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.00968 -38.90056 -35.77504 -33.80075 -33.01994 -31.34984 -28.32534 -27.96817 -26.27588 -25.79807 -22.60418 -21.06498 -19.67141 -18.86309 -17.97254 -17.16876 -16.84900 -16.09058 -15.61030 -15.30908 -14.97808 -14.63957 -13.98265 -13.91041 -13.82187 -13.44160 -13.32723 -13.10009 -12.90994 -12.63964 -12.42861 -12.31057 -12.26373 -11.86252 -11.56620 -11.47698 -10.86589 -10.47043 -9.33221 -8.42714 -8.36722 -6.46603 1.20320 1.31646 1.42118 1.60394 2.22044 2.23134 2.64724 2.83320 3.11709 4.00059 4.21437 4.25574 4.44563 4.48385 4.50390 4.60327 4.63933 4.74182 4.79373 4.81242 4.87887 4.99984 5.04153 5.09737 5.17109 5.32505 5.46480 5.55624 5.79120 6.10090 6.30071 6.43030 6.54548 6.60633 6.98899 7.19288 8.75714 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.024048 B = 0.010763 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.071243 B = 2600.821426 C = 2977.388237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.404 6.404 3 C 0.070 3.930 4 C 0.082 3.918 5 H 0.045 0.955 6 C -0.514 4.514 7 H 0.040 0.960 8 C 0.026 3.974 9 N -0.934 5.934 10 Si 0.934 3.066 11 H -0.263 1.263 12 H -0.251 1.251 13 H -0.288 1.288 14 C 0.055 3.945 15 N -0.551 5.551 16 H 0.410 0.590 17 C -0.007 4.007 18 C -0.072 4.072 19 C -0.213 4.213 20 C -0.205 4.205 21 C -0.068 4.068 22 H 0.106 0.894 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.270 0.730 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 -9.633 -6.922 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.324 6.324 3 C -0.007 4.007 4 C 0.063 3.937 5 H 0.063 0.937 6 C -0.552 4.552 7 H 0.058 0.942 8 C -0.174 4.174 9 N -0.573 5.573 10 Si 0.760 3.240 11 H -0.189 1.189 12 H -0.175 1.175 13 H -0.215 1.215 14 C -0.058 4.058 15 N -0.146 5.146 16 H 0.247 0.753 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.238 4.238 20 C -0.211 4.211 21 C -0.125 4.125 22 H 0.124 0.876 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.165 0.835 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.655 -9.519 -6.867 13.029 hybrid contribution -0.710 1.047 0.805 1.499 sum -6.365 -8.472 -6.062 12.208 Atomic orbital electron populations 1.22956 0.80485 1.03902 1.00228 1.87914 1.20771 1.28376 1.95317 1.23015 0.95425 0.83711 0.98536 1.17718 0.89923 0.94855 0.91239 0.93715 1.20954 1.28782 0.99117 1.06348 0.94162 1.25771 0.97032 0.94654 0.99905 1.70000 1.45531 1.10940 1.30857 0.86053 0.79252 0.80161 0.78494 1.18862 1.17484 1.21526 1.20069 1.04020 0.95857 0.85899 1.41843 1.45517 1.21733 1.05537 0.75350 1.20852 1.03952 0.93625 0.93435 1.20306 1.03979 1.02712 0.85950 1.20693 1.09329 1.01518 0.92250 1.19564 1.07572 0.98013 0.95981 1.20031 1.00437 0.97375 0.94700 0.87605 0.94205 0.93543 0.95221 0.93826 0.92050 0.90168 0.91592 0.89001 0.83539 0.92177 0.91061 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -16.25 10.46 -148.98 -1.56 -17.81 16 3 C 0.07 3.05 4.80 71.98 0.35 3.40 16 4 C 0.08 4.01 1.95 -12.29 -0.02 3.98 16 5 H 0.04 2.28 5.83 -2.39 -0.01 2.27 16 6 C -0.51 -29.01 9.13 25.60 0.23 -28.77 16 7 H 0.04 2.53 7.98 -2.91 -0.02 2.50 16 8 C 0.03 1.46 5.45 84.66 0.46 1.92 16 9 N -0.93 -56.71 13.96 21.45 0.30 -56.41 16 10 Si 0.93 43.99 24.41 68.60 1.67 45.66 16 11 H -0.26 -11.58 6.83 99.48 0.68 -10.90 16 12 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 14 C 0.05 2.46 5.38 41.08 0.22 2.68 16 15 N -0.55 -21.66 6.08 -171.12 -1.04 -22.70 16 16 H 0.41 15.07 8.96 -92.71 -0.83 14.24 16 17 C -0.01 -0.23 7.16 41.08 0.29 0.07 16 18 C -0.07 -1.67 10.42 71.23 0.74 -0.92 16 19 C -0.21 -7.68 10.71 22.14 0.24 -7.44 16 20 C -0.21 -8.53 6.14 -19.99 -0.12 -8.65 16 21 C -0.07 -2.49 10.01 71.24 0.71 -1.77 16 22 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.03 1.35 3.22 -2.39 -0.01 1.34 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.65 7.13 -2.39 -0.02 1.64 16 Total: -1.00 -66.75 280.31 3.90 -62.85 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.17 Total: 22.08 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 4.35 Total: -33.66 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -0.74 Total: -79.12 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.56 Total: -17.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -66.75 3.90 -62.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259552210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.718 kcal (2) G-P(sol) polarization free energy of solvation -66.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds