Wall clock time and date at job start Mon Mar 30 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47213 * 274.99278 * 3 2 1 5 5 H 1.48496 * 109.47389 * 34.99599 * 3 2 1 6 6 H 1.48500 * 109.46978 * 154.99482 * 3 2 1 7 7 C 1.37872 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 189.64352 * 7 2 1 9 9 C 1.50706 * 120.00024 * 9.64287 * 7 2 1 10 10 H 1.09001 * 109.09725 * 304.67876 * 9 7 2 11 11 C 1.52786 * 109.14148 * 63.88735 * 9 7 2 12 12 C 1.53313 * 108.19518 * 183.64079 * 11 9 7 13 13 C 1.50316 * 108.48772 * 303.87782 * 12 11 9 14 14 O 1.21279 * 118.75219 * 205.78592 * 13 12 11 15 15 N 1.34084 * 122.49442 * 25.75808 * 13 12 11 16 16 C 1.47732 * 117.82529 * 181.47952 * 15 13 12 17 17 C 1.53075 * 108.72556 * 233.64586 * 16 15 13 18 18 C 1.53062 * 109.27396 * 304.57495 * 17 16 15 19 19 C 1.53032 * 109.33214 * 61.60329 * 18 17 16 20 20 C 1.45684 * 124.03771 * 1.29039 * 15 13 12 21 21 H 1.08996 * 108.08405 * 244.43706 * 20 15 13 22 22 H 0.97006 * 120.00587 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.71890 * 63.96597 * 11 9 7 24 24 H 1.08998 * 109.72324 * 303.32203 * 11 9 7 25 25 H 1.08995 * 109.63421 * 184.17967 * 12 11 9 26 26 H 1.08998 * 109.63308 * 63.57761 * 12 11 9 27 27 H 1.09000 * 109.59761 * 353.41668 * 16 15 13 28 28 H 1.08998 * 109.59787 * 113.87635 * 16 15 13 29 29 H 1.09006 * 109.50425 * 64.51237 * 17 16 15 30 30 H 1.09006 * 109.50576 * 184.63244 * 17 16 15 31 31 H 1.09006 * 109.49417 * 181.56640 * 18 17 16 32 32 H 1.09003 * 109.48899 * 301.61704 * 18 17 16 33 33 H 1.09003 * 109.48311 * 59.34695 * 19 18 17 34 34 H 1.09002 * 109.48083 * 179.37803 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0730 -1.2007 0.1561 9 6 1.2670 -2.4898 -0.2197 10 1 0.4656 -2.5727 0.5145 11 6 0.6635 -2.4916 -1.6234 12 6 -0.1566 -3.7762 -1.7903 13 6 0.7380 -4.9521 -1.5137 14 8 0.4714 -6.0203 -2.0224 15 7 1.8198 -4.8647 -0.7263 16 6 2.6453 -6.0773 -0.5517 17 6 2.8039 -6.3524 0.9458 18 6 3.3832 -5.1113 1.6289 19 6 2.4150 -3.9390 1.4551 20 6 2.2311 -3.6485 -0.0377 21 1 3.1949 -3.3400 -0.4427 22 1 -0.4851 0.8400 -0.0004 23 1 1.4606 -2.4650 -2.3664 24 1 0.0162 -1.6234 -1.7465 25 1 -0.5375 -3.8376 -2.8096 26 1 -0.9876 -3.7743 -1.0851 27 1 2.1548 -6.9255 -1.0292 28 1 3.6262 -5.9195 -1.0002 29 1 1.8307 -6.5850 1.3782 30 1 3.4785 -7.1962 1.0914 31 1 3.5237 -5.3128 2.6909 32 1 4.3428 -4.8614 1.1761 33 1 1.4520 -4.1942 1.8974 34 1 2.8201 -3.0564 1.9503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259644365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:52 Heat of formation + Delta-G solvation = -59.352068 kcal Electronic energy + Delta-G solvation = -16173.170262 eV Core-core repulsion = 13683.650314 eV Total energy + Delta-G solvation = -2489.519948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.04351 -36.95182 -35.12862 -32.53282 -31.56097 -30.30667 -27.89339 -24.57026 -23.31863 -22.74303 -21.11048 -19.72683 -17.73185 -16.65908 -16.01983 -15.22210 -14.72674 -14.61955 -14.03158 -13.55861 -13.42600 -13.04369 -12.74561 -12.63534 -12.11699 -11.47770 -11.30085 -11.14333 -10.94967 -10.72239 -10.70421 -10.42849 -10.35945 -10.17309 -9.81853 -9.58935 -9.02740 -8.77888 -8.42337 -7.99967 -6.15143 -4.17838 3.23907 3.27870 3.32360 3.33865 3.65245 4.34934 5.10047 5.15385 5.21138 5.26518 5.45361 5.58549 5.75631 5.90949 5.92163 5.99654 6.04235 6.16605 6.19859 6.33292 6.36766 6.40912 6.51555 6.73051 6.78786 6.90863 6.99562 7.25879 7.56156 7.73029 7.83035 8.06618 8.30750 8.79070 8.86113 9.46210 10.93834 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.010014 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.457669 B = 2795.321995 C = 3424.152356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.042 3.958 10 H 0.041 0.959 11 C -0.107 4.107 12 C -0.136 4.136 13 C 0.520 3.480 14 O -0.583 6.583 15 N -0.596 5.596 16 C 0.102 3.898 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.121 4.121 20 C 0.151 3.849 21 H 0.060 0.940 22 H 0.262 0.738 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -6.581 1.496 8.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.059 0.941 11 C -0.145 4.145 12 C -0.176 4.176 13 C 0.311 3.689 14 O -0.464 6.464 15 N -0.328 5.328 16 C -0.021 4.021 17 C -0.169 4.169 18 C -0.159 4.159 19 C -0.159 4.159 20 C 0.048 3.952 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.043 -6.968 1.252 8.153 hybrid contribution 0.478 1.035 0.071 1.142 sum 4.521 -5.933 1.323 7.576 Atomic orbital electron populations 1.69950 1.05934 1.26827 1.49435 1.24919 0.94780 0.99105 0.94756 0.86614 0.80012 0.83538 0.78077 1.20648 1.21281 1.19820 1.21015 0.94044 0.90181 1.50151 0.92291 1.18662 0.94298 0.90874 0.93883 0.94072 1.21623 0.98485 0.95188 0.99189 1.21833 0.98533 0.94508 1.02701 1.20702 0.80849 0.90119 0.77277 1.90580 1.72796 1.30459 1.52613 1.47932 1.25901 1.11940 1.47049 1.21697 0.95029 0.89367 0.96009 1.21865 1.01313 0.98011 0.95760 1.21598 0.99086 0.95383 0.99843 1.21897 0.99169 0.98021 0.96852 1.20997 0.99922 0.83479 0.90798 0.92187 0.92794 0.93817 0.89245 0.89974 0.89120 0.89138 0.92137 0.91846 0.91524 0.92317 0.92133 0.92280 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.67 12.03 55.43 0.67 -23.01 16 2 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 3 Si 0.89 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.52 -12.87 8.07 -34.44 -0.28 -13.15 16 8 H 0.06 1.45 7.58 -52.49 -0.40 1.05 16 9 C 0.04 0.95 1.50 -92.47 -0.14 0.81 16 10 H 0.04 1.04 7.88 -51.93 -0.41 0.63 16 11 C -0.11 -2.35 5.15 -26.68 -0.14 -2.48 16 12 C -0.14 -2.70 6.08 -27.91 -0.17 -2.87 16 13 C 0.52 10.81 7.47 -11.48 -0.09 10.73 16 14 O -0.58 -13.21 16.06 5.56 0.09 -13.12 16 15 N -0.60 -11.39 2.96 -166.60 -0.49 -11.89 16 16 C 0.10 1.64 6.32 -3.33 -0.02 1.62 16 17 C -0.13 -1.81 6.07 -26.66 -0.16 -1.97 16 18 C -0.12 -1.71 5.91 -26.68 -0.16 -1.87 16 19 C -0.12 -2.10 5.20 -26.62 -0.14 -2.24 16 20 C 0.15 2.96 2.40 -68.87 -0.17 2.79 16 21 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 22 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.09 2.15 6.69 -51.93 -0.35 1.81 16 25 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 27 H 0.09 1.53 6.68 -51.93 -0.35 1.18 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 34 H 0.08 1.48 7.95 -51.93 -0.41 1.06 16 LS Contribution 267.25 15.07 4.03 4.03 Total: -1.00 -27.58 267.25 -7.53 -35.10 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.25 Total: 0.87 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.55 Total: -7.01 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.17 Total: -34.89 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.58 -7.53 -35.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.247 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds