Wall clock time and date at job start Mon Mar 30 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47213 * 274.99278 * 3 2 1 5 5 H 1.48496 * 109.47389 * 34.99599 * 3 2 1 6 6 H 1.48500 * 109.46978 * 154.99482 * 3 2 1 7 7 C 1.37872 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 189.64352 * 7 2 1 9 9 C 1.50706 * 120.00024 * 9.64287 * 7 2 1 10 10 H 1.09001 * 109.09725 * 304.67876 * 9 7 2 11 11 C 1.52786 * 109.14148 * 63.88735 * 9 7 2 12 12 C 1.53313 * 108.19518 * 183.64079 * 11 9 7 13 13 C 1.50316 * 108.48772 * 303.87782 * 12 11 9 14 14 O 1.21279 * 118.75219 * 205.78592 * 13 12 11 15 15 N 1.34084 * 122.49442 * 25.75808 * 13 12 11 16 16 C 1.47732 * 117.82529 * 181.47952 * 15 13 12 17 17 C 1.53075 * 108.72556 * 233.64586 * 16 15 13 18 18 C 1.53062 * 109.27396 * 304.57495 * 17 16 15 19 19 C 1.53032 * 109.33214 * 61.60329 * 18 17 16 20 20 C 1.45684 * 124.03771 * 1.29039 * 15 13 12 21 21 H 1.08996 * 108.08405 * 244.43706 * 20 15 13 22 22 H 0.97006 * 120.00587 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.71890 * 63.96597 * 11 9 7 24 24 H 1.08998 * 109.72324 * 303.32203 * 11 9 7 25 25 H 1.08995 * 109.63421 * 184.17967 * 12 11 9 26 26 H 1.08998 * 109.63308 * 63.57761 * 12 11 9 27 27 H 1.09000 * 109.59761 * 353.41668 * 16 15 13 28 28 H 1.08998 * 109.59787 * 113.87635 * 16 15 13 29 29 H 1.09006 * 109.50425 * 64.51237 * 17 16 15 30 30 H 1.09006 * 109.50576 * 184.63244 * 17 16 15 31 31 H 1.09006 * 109.49417 * 181.56640 * 18 17 16 32 32 H 1.09003 * 109.48899 * 301.61704 * 18 17 16 33 33 H 1.09003 * 109.48311 * 59.34695 * 19 18 17 34 34 H 1.09002 * 109.48083 * 179.37803 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0730 -1.2007 0.1561 9 6 1.2670 -2.4898 -0.2197 10 1 0.4656 -2.5727 0.5145 11 6 0.6635 -2.4916 -1.6234 12 6 -0.1566 -3.7762 -1.7903 13 6 0.7380 -4.9521 -1.5137 14 8 0.4714 -6.0203 -2.0224 15 7 1.8198 -4.8647 -0.7263 16 6 2.6453 -6.0773 -0.5517 17 6 2.8039 -6.3524 0.9458 18 6 3.3832 -5.1113 1.6289 19 6 2.4150 -3.9390 1.4551 20 6 2.2311 -3.6485 -0.0377 21 1 3.1949 -3.3400 -0.4427 22 1 -0.4851 0.8400 -0.0004 23 1 1.4606 -2.4650 -2.3664 24 1 0.0162 -1.6234 -1.7465 25 1 -0.5375 -3.8376 -2.8096 26 1 -0.9876 -3.7743 -1.0851 27 1 2.1548 -6.9255 -1.0292 28 1 3.6262 -5.9195 -1.0002 29 1 1.8307 -6.5850 1.3782 30 1 3.4785 -7.1962 1.0914 31 1 3.5237 -5.3128 2.6909 32 1 4.3428 -4.8614 1.1761 33 1 1.4520 -4.1942 1.8974 34 1 2.8201 -3.0564 1.9503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259644365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:52 Heat of formation + Delta-G solvation = -74.582529 kcal Electronic energy + Delta-G solvation = -16173.830705 eV Core-core repulsion = 13683.650314 eV Total energy + Delta-G solvation = -2490.180391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62259 -38.52942 -36.74937 -34.27964 -33.16729 -31.81147 -29.55024 -26.32453 -24.83981 -24.23274 -22.76223 -21.09148 -19.40100 -18.51462 -17.62297 -16.83903 -16.46157 -16.26373 -15.40092 -14.97833 -14.94279 -14.54458 -14.37125 -14.19353 -13.67421 -13.22622 -12.91943 -12.78689 -12.65148 -12.43589 -12.16707 -12.00547 -11.74001 -11.60204 -11.44591 -11.27755 -10.87630 -10.52376 -10.31914 -9.53130 -8.12387 -6.20060 1.44684 1.48179 1.55966 1.63167 2.13875 2.47221 3.19399 3.70230 3.94216 3.99403 4.05768 4.20516 4.32089 4.38043 4.41822 4.52315 4.67152 4.78056 4.92623 4.95299 5.01704 5.04541 5.14951 5.19997 5.28625 5.31669 5.47656 5.63340 5.70118 5.86761 5.91459 6.23880 6.58668 6.89033 7.18829 7.46751 8.96391 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.010014 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.457669 B = 2795.321995 C = 3424.152356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.948 3.052 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.042 3.958 10 H 0.011 0.989 11 C -0.099 4.099 12 C -0.130 4.130 13 C 0.515 3.485 14 O -0.604 6.604 15 N -0.595 5.595 16 C 0.096 3.904 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.118 4.118 20 C 0.156 3.844 21 H 0.059 0.941 22 H 0.261 0.739 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 -7.308 1.941 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.023 3.977 10 H 0.029 0.971 11 C -0.137 4.137 12 C -0.169 4.169 13 C 0.305 3.695 14 O -0.487 6.487 15 N -0.326 5.326 16 C -0.026 4.026 17 C -0.162 4.162 18 C -0.152 4.152 19 C -0.157 4.157 20 C 0.054 3.946 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.758 -7.702 1.712 9.768 hybrid contribution -0.051 1.257 -0.063 1.260 sum 5.707 -6.445 1.649 8.765 Atomic orbital electron populations 1.70061 1.07202 1.27365 1.50571 1.25609 0.95432 1.02069 0.94722 0.85698 0.79110 0.79915 0.77885 1.20561 1.21470 1.18919 1.21321 0.94253 0.91162 1.49438 0.92067 1.18580 0.93965 0.91831 0.93323 0.97129 1.21436 0.98196 0.95323 0.98737 1.21764 0.98230 0.93233 1.03713 1.20738 0.81399 0.89839 0.77513 1.90569 1.73478 1.31035 1.53651 1.48001 1.25704 1.12808 1.46112 1.21964 0.95066 0.87538 0.98027 1.21846 1.01734 0.99064 0.93561 1.21567 0.98321 0.93715 1.01559 1.21843 0.99695 0.99435 0.94686 1.20809 0.98470 0.82828 0.92535 0.92255 0.92949 0.93910 0.91667 0.88432 0.89093 0.89958 0.90323 0.92820 0.87998 0.90014 0.90984 0.93439 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.78 12.03 21.44 0.26 -49.53 16 2 C 0.02 1.11 5.15 84.65 0.44 1.54 16 3 Si 0.95 41.00 29.55 68.60 2.03 43.03 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.52 -26.17 8.07 25.60 0.21 -25.97 16 8 H 0.06 2.97 7.58 -2.91 -0.02 2.95 16 9 C 0.04 1.93 1.50 -11.99 -0.02 1.91 16 10 H 0.01 0.55 7.88 -2.39 -0.02 0.53 16 11 C -0.10 -4.40 5.15 30.63 0.16 -4.24 16 12 C -0.13 -5.17 6.08 29.83 0.18 -4.99 16 13 C 0.51 21.11 7.47 87.64 0.65 21.76 16 14 O -0.60 -26.92 16.06 -3.02 -0.05 -26.97 16 15 N -0.60 -22.06 2.96 -799.80 -2.37 -24.43 16 16 C 0.10 2.85 6.32 86.17 0.54 3.39 16 17 C -0.12 -3.01 6.07 30.64 0.19 -2.82 16 18 C -0.11 -2.84 5.91 30.63 0.18 -2.66 16 19 C -0.12 -3.96 5.20 30.67 0.16 -3.80 16 20 C 0.16 6.01 2.40 44.82 0.11 6.12 16 21 H 0.06 2.31 7.67 -2.39 -0.02 2.29 16 22 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.06 3.22 6.69 -2.39 -0.02 3.21 16 25 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 26 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 27 H 0.08 2.63 6.68 -2.39 -0.02 2.61 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.42 8.14 -2.38 -0.02 1.41 16 30 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 34 H 0.07 2.59 7.95 -2.39 -0.02 2.57 16 Total: -1.00 -58.44 267.25 3.73 -54.71 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.07 Total: 12.92 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 2.80 Total: -9.74 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -2.11 Total: -73.96 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -58.44 3.73 -54.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.868 kcal (2) G-P(sol) polarization free energy of solvation -58.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds