Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00162 * 2 1 4 4 H 1.48498 * 109.46971 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47309 * 119.99806 * 3 2 1 6 6 H 1.48507 * 109.46750 * 240.00050 * 3 2 1 7 7 C 1.37886 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99581 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99980 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.15493 * 334.40725 * 9 7 2 11 11 C 1.52794 * 109.15716 * 93.58710 * 9 7 2 12 12 C 1.53288 * 108.20463 * 57.14627 * 11 9 7 13 13 C 1.50318 * 108.52436 * 56.01582 * 12 11 9 14 14 O 1.21279 * 118.74607 * 154.41985 * 13 12 11 15 15 N 1.34080 * 122.50516 * 334.44869 * 13 12 11 16 16 C 1.47735 * 117.85625 * 178.18207 * 15 13 12 17 17 C 1.53071 * 108.70850 * 126.46967 * 16 15 13 18 18 C 1.53060 * 109.29878 * 55.39825 * 17 16 15 19 19 C 1.53041 * 109.34758 * 298.43965 * 18 17 16 20 20 C 1.45690 * 124.03056 * 358.54651 * 15 13 12 21 21 H 1.09001 * 107.49154 * 115.86677 * 20 15 13 22 22 H 0.96996 * 120.00080 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.72074 * 176.80825 * 11 9 7 24 24 H 1.08997 * 109.71919 * 297.45621 * 11 9 7 25 25 H 1.09002 * 109.61218 * 296.31459 * 12 11 9 26 26 H 1.09004 * 109.63676 * 175.73341 * 12 11 9 27 27 H 1.09000 * 109.59474 * 6.70085 * 16 15 13 28 28 H 1.09005 * 109.59573 * 246.23759 * 16 15 13 29 29 H 1.09004 * 109.49825 * 295.45459 * 17 16 15 30 30 H 1.08994 * 109.52957 * 175.36725 * 17 16 15 31 31 H 1.09003 * 109.48835 * 178.47868 * 18 17 16 32 32 H 1.08995 * 109.51226 * 58.42203 * 18 17 16 33 33 H 1.08998 * 109.49371 * 300.65902 * 19 18 17 34 34 H 1.09001 * 109.50937 * 180.60062 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.2678 -2.3445 0.4449 11 6 1.0791 -2.9789 -1.4399 12 6 2.4697 -3.1016 -2.0730 13 6 3.3025 -4.0194 -1.2223 14 8 4.2212 -4.6197 -1.7386 15 7 3.0680 -4.2001 0.0854 16 6 3.9248 -5.1576 0.8146 17 6 4.5208 -4.4521 2.0353 18 6 3.3892 -3.8691 2.8852 19 6 2.6170 -2.8360 2.0614 20 6 2.0168 -3.5165 0.8273 21 1 1.3117 -4.2740 1.1696 22 1 -0.4850 0.8400 -0.0004 23 1 0.5848 -3.9504 -1.4475 24 1 0.4827 -2.2579 -1.9989 25 1 2.9389 -2.1188 -2.1189 26 1 2.3797 -3.5148 -3.0777 27 1 4.7278 -5.5000 0.1619 28 1 3.3269 -6.0089 1.1399 29 1 5.1793 -3.6485 1.7056 30 1 5.0894 -5.1683 2.6284 31 1 3.8086 -3.3893 3.7695 32 1 2.7144 -4.6686 3.1908 33 1 3.2945 -2.0425 1.7458 34 1 1.8170 -2.4112 2.6678 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259644382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -56.396329 kcal Electronic energy + Delta-G solvation = -16409.548840 eV Core-core repulsion = 13920.157062 eV Total energy + Delta-G solvation = -2489.391778 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00317 -36.85636 -35.10451 -32.42909 -31.45583 -30.17928 -27.51939 -24.84423 -23.49451 -22.69950 -20.91870 -19.64047 -17.98194 -16.05091 -15.78499 -15.20628 -14.78793 -14.61544 -13.83371 -13.46939 -13.35781 -13.06245 -12.73106 -12.46608 -12.18098 -11.59322 -11.14777 -11.02604 -10.97296 -10.86848 -10.64366 -10.28277 -10.21332 -10.09744 -9.67907 -9.43593 -8.93657 -8.66966 -8.52218 -7.89631 -6.12421 -4.14608 3.26019 3.31713 3.34964 3.40801 3.76409 4.35506 5.18136 5.22359 5.29987 5.37994 5.58352 5.70876 5.84316 5.97670 5.99791 6.09169 6.09545 6.24256 6.29893 6.38870 6.45186 6.50983 6.62603 6.79404 6.93071 6.97382 7.18270 7.28423 7.49832 7.52794 7.80853 8.24817 8.29993 8.89775 8.93578 9.48585 10.96701 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027533 B = 0.011774 C = 0.010057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.721958 B = 2377.481607 C = 2783.429281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.024 3.976 10 H 0.074 0.926 11 C -0.103 4.103 12 C -0.123 4.123 13 C 0.526 3.474 14 O -0.587 6.587 15 N -0.592 5.592 16 C 0.103 3.897 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.114 4.114 20 C 0.158 3.842 21 H 0.039 0.961 22 H 0.263 0.737 23 H 0.031 0.969 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -5.812 3.512 7.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.006 3.994 10 H 0.092 0.908 11 C -0.141 4.141 12 C -0.162 4.162 13 C 0.316 3.684 14 O -0.469 6.469 15 N -0.324 5.324 16 C -0.020 4.020 17 C -0.169 4.169 18 C -0.162 4.162 19 C -0.152 4.152 20 C 0.055 3.945 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.246 -5.964 3.259 7.532 hybrid contribution 0.392 1.045 0.121 1.123 sum 3.638 -4.919 3.379 6.990 Atomic orbital electron populations 1.69881 1.05873 1.26898 1.50230 1.24920 0.94769 0.98996 0.94754 0.86746 0.79696 0.83388 0.78771 1.21343 1.20242 1.20214 1.20920 0.92654 0.89890 1.50970 0.92663 1.18896 0.97623 0.92156 0.90756 0.90750 1.21594 0.93985 0.98670 0.99887 1.21628 0.97485 0.99993 0.97108 1.20641 0.83958 0.81480 0.82277 1.90571 1.33200 1.50768 1.72362 1.47813 1.33985 1.42055 1.08522 1.21676 0.95199 0.91494 0.93664 1.21842 0.98249 1.00251 0.96529 1.21666 0.97351 0.99106 0.98103 1.21860 1.00438 0.97590 0.95311 1.20962 0.86941 0.93943 0.92629 0.94288 0.92751 0.95051 0.91194 0.87598 0.90763 0.89248 0.92415 0.91734 0.91817 0.92502 0.92716 0.89992 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 12.79 55.43 0.71 -23.06 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -12.34 5.14 -34.44 -0.18 -12.51 16 8 H 0.06 1.39 6.95 -52.49 -0.36 1.02 16 9 C 0.02 0.55 2.39 -92.48 -0.22 0.32 16 10 H 0.07 1.83 7.30 -51.93 -0.38 1.45 16 11 C -0.10 -2.15 5.59 -26.69 -0.15 -2.30 16 12 C -0.12 -2.50 5.70 -27.92 -0.16 -2.66 16 13 C 0.53 11.25 7.46 -11.48 -0.09 11.17 16 14 O -0.59 -13.73 16.06 5.56 0.09 -13.64 16 15 N -0.59 -11.56 2.96 -166.61 -0.49 -12.06 16 16 C 0.10 1.71 6.32 -3.33 -0.02 1.69 16 17 C -0.13 -1.93 6.07 -26.66 -0.16 -2.09 16 18 C -0.12 -1.86 5.91 -26.68 -0.16 -2.02 16 19 C -0.11 -2.09 4.73 -26.61 -0.13 -2.22 16 20 C 0.16 3.10 2.65 -68.87 -0.18 2.91 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.11 2.28 7.15 -51.93 -0.37 1.91 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.09 1.57 6.69 -51.93 -0.35 1.23 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.68 6.32 -51.93 -0.33 1.36 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 264.21 15.07 3.98 3.98 Total: -1.00 -27.29 264.21 -7.43 -34.72 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.15 Total: 0.97 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.54 Total: -6.07 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.22 Total: -35.12 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.29 -7.43 -34.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.679 kcal (2) G-P(sol) polarization free energy of solvation -27.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds