Wall clock time and date at job start Mon Mar 30 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00162 * 2 1 4 4 H 1.48498 * 109.46971 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47309 * 119.99806 * 3 2 1 6 6 H 1.48507 * 109.46750 * 240.00050 * 3 2 1 7 7 C 1.37886 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99581 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99980 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.15493 * 334.40725 * 9 7 2 11 11 C 1.52794 * 109.15716 * 93.58710 * 9 7 2 12 12 C 1.53288 * 108.20463 * 57.14627 * 11 9 7 13 13 C 1.50318 * 108.52436 * 56.01582 * 12 11 9 14 14 O 1.21279 * 118.74607 * 154.41985 * 13 12 11 15 15 N 1.34080 * 122.50516 * 334.44869 * 13 12 11 16 16 C 1.47735 * 117.85625 * 178.18207 * 15 13 12 17 17 C 1.53071 * 108.70850 * 126.46967 * 16 15 13 18 18 C 1.53060 * 109.29878 * 55.39825 * 17 16 15 19 19 C 1.53041 * 109.34758 * 298.43965 * 18 17 16 20 20 C 1.45690 * 124.03056 * 358.54651 * 15 13 12 21 21 H 1.09001 * 107.49154 * 115.86677 * 20 15 13 22 22 H 0.96996 * 120.00080 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.72074 * 176.80825 * 11 9 7 24 24 H 1.08997 * 109.71919 * 297.45621 * 11 9 7 25 25 H 1.09002 * 109.61218 * 296.31459 * 12 11 9 26 26 H 1.09004 * 109.63676 * 175.73341 * 12 11 9 27 27 H 1.09000 * 109.59474 * 6.70085 * 16 15 13 28 28 H 1.09005 * 109.59573 * 246.23759 * 16 15 13 29 29 H 1.09004 * 109.49825 * 295.45459 * 17 16 15 30 30 H 1.08994 * 109.52957 * 175.36725 * 17 16 15 31 31 H 1.09003 * 109.48835 * 178.47868 * 18 17 16 32 32 H 1.08995 * 109.51226 * 58.42203 * 18 17 16 33 33 H 1.08998 * 109.49371 * 300.65902 * 19 18 17 34 34 H 1.09001 * 109.50937 * 180.60062 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.2678 -2.3445 0.4449 11 6 1.0791 -2.9789 -1.4399 12 6 2.4697 -3.1016 -2.0730 13 6 3.3025 -4.0194 -1.2223 14 8 4.2212 -4.6197 -1.7386 15 7 3.0680 -4.2001 0.0854 16 6 3.9248 -5.1576 0.8146 17 6 4.5208 -4.4521 2.0353 18 6 3.3892 -3.8691 2.8852 19 6 2.6170 -2.8360 2.0614 20 6 2.0168 -3.5165 0.8273 21 1 1.3117 -4.2740 1.1696 22 1 -0.4850 0.8400 -0.0004 23 1 0.5848 -3.9504 -1.4475 24 1 0.4827 -2.2579 -1.9989 25 1 2.9389 -2.1188 -2.1189 26 1 2.3797 -3.5148 -3.0777 27 1 4.7278 -5.5000 0.1619 28 1 3.3269 -6.0089 1.1399 29 1 5.1793 -3.6485 1.7056 30 1 5.0894 -5.1683 2.6284 31 1 3.8086 -3.3893 3.7695 32 1 2.7144 -4.6686 3.1908 33 1 3.2945 -2.0425 1.7458 34 1 1.8170 -2.4112 2.6678 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259644382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:00 Heat of formation + Delta-G solvation = -71.484140 kcal Electronic energy + Delta-G solvation = -16410.203097 eV Core-core repulsion = 13920.157062 eV Total energy + Delta-G solvation = -2490.046035 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60789 -38.47949 -36.70850 -34.20492 -33.08925 -31.68894 -29.15912 -26.71807 -24.96908 -24.18509 -22.59221 -21.01998 -19.75097 -17.72131 -17.50167 -16.86443 -16.51971 -16.29290 -15.24804 -14.98689 -14.90794 -14.60339 -14.29545 -14.08703 -13.83158 -13.26079 -12.83146 -12.73939 -12.66301 -12.51203 -12.18268 -11.92696 -11.61933 -11.54692 -11.25472 -11.20097 -10.77641 -10.48596 -10.33575 -9.45047 -8.09380 -6.14120 1.42335 1.45403 1.50422 1.72675 2.23809 2.45175 3.23735 3.77812 4.02431 4.06640 4.11254 4.28975 4.35628 4.47099 4.48531 4.56737 4.69363 4.83356 4.94651 4.99174 5.06192 5.15781 5.22955 5.28223 5.29385 5.37914 5.59358 5.65815 5.74818 5.75148 5.89448 6.35795 6.64897 6.95562 7.27822 7.50315 8.99299 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027533 B = 0.011774 C = 0.010057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.721958 B = 2377.481607 C = 2783.429281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.288 1.288 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.497 4.497 8 H 0.045 0.955 9 C 0.021 3.979 10 H 0.050 0.950 11 C -0.096 4.096 12 C -0.118 4.118 13 C 0.519 3.481 14 O -0.610 6.610 15 N -0.591 5.591 16 C 0.097 3.903 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.111 4.111 20 C 0.160 3.840 21 H 0.056 0.944 22 H 0.261 0.739 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 -6.923 4.574 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.003 3.997 10 H 0.068 0.932 11 C -0.134 4.134 12 C -0.158 4.158 13 C 0.309 3.691 14 O -0.495 6.495 15 N -0.322 5.322 16 C -0.024 4.024 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.149 4.149 20 C 0.057 3.943 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.961 -7.078 4.345 9.202 hybrid contribution 0.173 1.353 -0.200 1.379 sum 4.134 -5.725 4.145 8.188 Atomic orbital electron populations 1.69975 1.06853 1.27191 1.51906 1.25463 0.95320 1.01442 0.95154 0.85975 0.78618 0.80645 0.78606 1.21408 1.19894 1.20326 1.21032 0.92133 0.90901 1.49421 0.93687 1.18845 0.96563 0.92432 0.91906 0.93230 1.21457 0.94246 0.98961 0.98738 1.21569 0.96740 0.99318 0.98146 1.20728 0.83823 0.81489 0.83035 1.90557 1.34152 1.51807 1.72943 1.47895 1.34041 1.42061 1.08158 1.21928 0.94901 0.91732 0.93885 1.21823 0.98061 1.00362 0.95991 1.21613 0.97273 0.98588 0.97927 1.21771 1.00006 0.97937 0.95212 1.20841 0.87270 0.93798 0.92415 0.92568 0.93023 0.93327 0.92897 0.89091 0.88934 0.90307 0.89920 0.93520 0.88234 0.90746 0.90755 0.92711 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 12.79 21.45 0.27 -49.47 16 2 C 0.03 1.29 5.46 84.66 0.46 1.76 16 3 Si 0.93 41.67 29.54 68.60 2.03 43.70 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.50 -24.38 5.14 25.60 0.13 -24.25 16 8 H 0.04 2.28 6.95 -2.91 -0.02 2.26 16 9 C 0.02 0.95 2.39 -12.00 -0.03 0.93 16 10 H 0.05 2.46 7.30 -2.39 -0.02 2.45 16 11 C -0.10 -3.97 5.59 30.62 0.17 -3.80 16 12 C -0.12 -4.77 5.70 29.82 0.17 -4.60 16 13 C 0.52 21.70 7.46 87.65 0.65 22.35 16 14 O -0.61 -28.00 16.06 -3.03 -0.05 -28.05 16 15 N -0.59 -22.10 2.96 -799.80 -2.37 -24.47 16 16 C 0.10 2.97 6.32 86.17 0.54 3.51 16 17 C -0.12 -3.26 6.07 30.64 0.19 -3.07 16 18 C -0.12 -3.08 5.91 30.63 0.18 -2.90 16 19 C -0.11 -3.92 4.73 30.67 0.15 -3.78 16 20 C 0.16 6.03 2.65 44.82 0.12 6.15 16 21 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 23 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.09 3.94 7.15 -2.39 -0.02 3.92 16 26 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 27 H 0.08 2.61 6.69 -2.39 -0.02 2.60 16 28 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 2.22 6.32 -2.39 -0.02 2.21 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -57.78 264.21 3.69 -54.09 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.07 Total: 11.90 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 2.74 Total: -7.70 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.09 Total: -73.94 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -57.78 3.69 -54.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.395 kcal (2) G-P(sol) polarization free energy of solvation -57.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds