Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47144 * 270.00436 * 3 2 1 5 5 H 1.48500 * 109.47129 * 30.00533 * 3 2 1 6 6 H 1.48494 * 109.46920 * 150.00331 * 3 2 1 7 7 C 1.37873 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00004 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00049 * 180.02562 * 7 2 1 10 10 H 1.08991 * 110.97603 * 62.61931 * 9 7 2 11 11 C 1.54778 * 111.06799 * 298.53937 * 9 7 2 12 12 C 1.51169 * 104.28047 * 266.94667 * 11 9 7 13 13 O 1.21276 * 124.79770 * 164.43027 * 12 11 9 14 14 N 1.35486 * 110.41032 * 344.41182 * 12 11 9 15 15 C 1.46094 * 123.61195 * 176.67391 * 14 12 11 16 16 C 1.49412 * 114.23484 * 149.89119 * 15 14 12 17 17 C 1.51024 * 115.02943 * 77.50374 * 16 15 14 18 18 C 1.50839 * 112.36130 * 281.12700 * 17 16 15 19 19 C 1.51518 * 112.00736 * 66.72449 * 18 17 16 20 20 C 1.45951 * 110.13078 * 358.22578 * 14 12 11 21 21 H 1.09004 * 107.26341 * 264.74447 * 20 14 12 22 22 H 0.96996 * 120.00156 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.49270 * 148.20984 * 11 9 7 24 24 H 1.09002 * 110.49493 * 25.68513 * 11 9 7 25 25 H 1.09004 * 108.53215 * 271.12281 * 15 14 12 26 26 H 1.09003 * 108.53059 * 28.65823 * 15 14 12 27 27 H 1.08995 * 108.37941 * 198.94667 * 16 15 14 28 28 H 1.09003 * 108.37151 * 316.07008 * 16 15 14 29 29 H 1.09001 * 108.90061 * 41.86680 * 17 16 15 30 30 H 1.08998 * 108.90458 * 160.48133 * 17 16 15 31 31 H 1.08991 * 108.97651 * 187.37870 * 18 17 16 32 32 H 1.09003 * 108.97453 * 306.07873 * 18 17 16 33 33 H 1.08998 * 108.48897 * 43.99563 * 19 18 17 34 34 H 1.09000 * 108.49130 * 161.43336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.9014 -0.7266 0.9042 11 6 4.0685 -0.5031 -1.2681 12 6 4.2757 -1.6348 -2.2487 13 8 4.4442 -1.4948 -3.4415 14 7 4.2470 -2.8275 -1.6067 15 6 4.3473 -4.1157 -2.2887 16 6 4.9857 -5.1930 -1.4737 17 6 4.0957 -5.8106 -0.4215 18 6 3.9783 -4.9472 0.8097 19 6 3.2478 -3.6503 0.5262 20 6 4.0671 -2.6221 -0.1730 21 1 5.0578 -2.6294 0.2816 22 1 -0.4850 0.8400 0.0004 23 1 5.0154 -0.0097 -1.0492 24 1 3.3472 0.2141 -1.6599 25 1 3.3443 -4.4397 -2.5665 26 1 4.9289 -3.9804 -3.2007 27 1 5.3192 -5.9819 -2.1478 28 1 5.8631 -4.7757 -0.9795 29 1 3.1019 -5.9609 -0.8435 30 1 4.5071 -6.7783 -0.1346 31 1 3.4369 -5.4981 1.5787 32 1 4.9781 -4.7174 1.1781 33 1 2.3746 -3.8724 -0.0873 34 1 2.9038 -3.2333 1.4727 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -45.709858 kcal Electronic energy + Delta-G solvation = -16261.182331 eV Core-core repulsion = 13772.253953 eV Total energy + Delta-G solvation = -2488.928378 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15074 -37.10166 -35.33783 -33.22391 -32.19564 -30.11088 -27.83899 -25.07856 -24.73079 -21.79003 -20.22060 -20.14081 -18.17611 -17.00008 -16.32922 -15.45681 -15.00447 -14.44382 -14.25559 -13.88957 -13.52208 -13.17813 -12.90475 -12.30021 -12.08078 -11.93125 -11.78462 -11.46721 -11.05816 -10.77756 -10.63541 -10.55724 -10.38990 -10.29495 -9.87096 -9.56987 -9.08437 -9.03619 -8.62834 -7.90767 -6.15113 -4.16789 3.22936 3.27353 3.33031 3.38343 3.69324 4.33845 4.87993 5.01475 5.09001 5.12438 5.23213 5.38692 5.61073 5.67560 5.77242 5.87403 5.92764 6.10049 6.11067 6.14686 6.20594 6.23216 6.35354 6.45849 6.47776 6.60509 6.74335 6.98399 7.07922 7.40984 7.61027 7.82323 8.39761 8.87703 8.91788 9.45481 10.96918 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.011081 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.470815 B = 2526.324173 C = 3015.717632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.084 0.916 9 C 0.011 3.989 10 H 0.055 0.945 11 C -0.169 4.169 12 C 0.533 3.467 13 O -0.558 6.558 14 N -0.605 5.605 15 C 0.132 3.868 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.115 4.115 20 C 0.158 3.842 21 H 0.038 0.962 22 H 0.265 0.735 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.072 -8.278 1.857 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.553 4.553 8 H 0.102 0.898 9 C -0.008 4.008 10 H 0.073 0.927 11 C -0.209 4.209 12 C 0.323 3.677 13 O -0.437 6.437 14 N -0.340 5.340 15 C 0.010 3.990 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.153 4.153 20 C 0.054 3.946 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.018 -8.194 1.220 12.245 hybrid contribution 0.261 0.931 -0.071 0.970 sum 9.279 -7.263 1.149 11.839 Atomic orbital electron populations 1.69881 1.06256 1.27126 1.49823 1.24997 0.94706 0.99001 0.94170 0.87034 0.80463 0.83932 0.78508 1.20080 1.21787 1.18575 1.20931 0.87704 0.94964 1.51663 0.89778 1.20316 0.97902 0.89637 0.92987 0.92686 1.22906 1.01803 0.97469 0.98738 1.21208 0.73629 0.85138 0.87774 1.90593 1.51495 1.86036 1.15558 1.48216 1.72151 1.05108 1.08501 1.20273 1.00692 0.83050 0.94990 1.20668 0.99678 0.97615 0.98363 1.20833 1.00205 0.98399 0.95954 1.20996 1.00667 0.96673 0.97203 1.20555 0.99199 0.93556 1.02025 1.20338 0.97589 0.97182 0.79454 0.94366 0.92484 0.90224 0.88646 0.93022 0.90950 0.91184 0.91842 0.92014 0.92330 0.92049 0.92643 0.91139 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.07 2.03 5.39 -17.82 -0.10 1.93 16 3 Si 0.87 20.72 24.66 -169.99 -4.19 16.53 16 4 H -0.27 -6.55 6.85 56.52 0.39 -6.17 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -5.75 6.63 56.52 0.37 -5.38 16 7 C -0.52 -13.40 8.60 -34.44 -0.30 -13.69 16 8 H 0.08 2.35 6.29 -52.48 -0.33 2.02 16 9 C 0.01 0.24 2.30 -90.20 -0.21 0.03 16 10 H 0.06 1.15 7.44 -51.93 -0.39 0.76 16 11 C -0.17 -3.69 5.06 -26.72 -0.14 -3.83 16 12 C 0.53 11.93 8.00 -10.44 -0.08 11.85 16 13 O -0.56 -13.85 17.47 5.56 0.10 -13.76 16 14 N -0.61 -11.73 3.26 -170.11 -0.55 -12.28 16 15 C 0.13 2.14 5.95 -6.03 -0.04 2.10 16 16 C -0.13 -1.58 5.14 -29.49 -0.15 -1.73 16 17 C -0.12 -1.41 5.47 -28.81 -0.16 -1.56 16 18 C -0.12 -1.55 5.50 -28.56 -0.16 -1.71 16 19 C -0.12 -1.95 3.60 -29.49 -0.11 -2.06 16 20 C 0.16 2.93 2.48 -69.60 -0.17 2.76 16 21 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 24 H 0.10 2.29 4.81 -51.93 -0.25 2.04 16 25 H 0.05 0.86 7.97 -51.93 -0.41 0.44 16 26 H 0.07 1.18 7.77 -51.93 -0.40 0.77 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 29 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.69 7.83 -51.93 -0.41 0.28 16 33 H 0.07 1.35 7.08 -51.93 -0.37 0.98 16 34 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -30.23 258.96 -6.63 -36.86 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.06 Total: 0.23 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.60 Total: -5.90 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.22 Total: -37.87 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.10 Total: -13.76 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.19 Total: 16.53 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.23 -6.63 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.849 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds