Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47144 * 270.00436 * 3 2 1 5 5 H 1.48500 * 109.47129 * 30.00533 * 3 2 1 6 6 H 1.48494 * 109.46920 * 150.00331 * 3 2 1 7 7 C 1.37873 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00004 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00049 * 180.02562 * 7 2 1 10 10 H 1.08991 * 110.97603 * 62.61931 * 9 7 2 11 11 C 1.54778 * 111.06799 * 298.53937 * 9 7 2 12 12 C 1.51169 * 104.28047 * 266.94667 * 11 9 7 13 13 O 1.21276 * 124.79770 * 164.43027 * 12 11 9 14 14 N 1.35486 * 110.41032 * 344.41182 * 12 11 9 15 15 C 1.46094 * 123.61195 * 176.67391 * 14 12 11 16 16 C 1.49412 * 114.23484 * 149.89119 * 15 14 12 17 17 C 1.51024 * 115.02943 * 77.50374 * 16 15 14 18 18 C 1.50839 * 112.36130 * 281.12700 * 17 16 15 19 19 C 1.51518 * 112.00736 * 66.72449 * 18 17 16 20 20 C 1.45951 * 110.13078 * 358.22578 * 14 12 11 21 21 H 1.09004 * 107.26341 * 264.74447 * 20 14 12 22 22 H 0.96996 * 120.00156 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.49270 * 148.20984 * 11 9 7 24 24 H 1.09002 * 110.49493 * 25.68513 * 11 9 7 25 25 H 1.09004 * 108.53215 * 271.12281 * 15 14 12 26 26 H 1.09003 * 108.53059 * 28.65823 * 15 14 12 27 27 H 1.08995 * 108.37941 * 198.94667 * 16 15 14 28 28 H 1.09003 * 108.37151 * 316.07008 * 16 15 14 29 29 H 1.09001 * 108.90061 * 41.86680 * 17 16 15 30 30 H 1.08998 * 108.90458 * 160.48133 * 17 16 15 31 31 H 1.08991 * 108.97651 * 187.37870 * 18 17 16 32 32 H 1.09003 * 108.97453 * 306.07873 * 18 17 16 33 33 H 1.08998 * 108.48897 * 43.99563 * 19 18 17 34 34 H 1.09000 * 108.49130 * 161.43336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.9014 -0.7266 0.9042 11 6 4.0685 -0.5031 -1.2681 12 6 4.2757 -1.6348 -2.2487 13 8 4.4442 -1.4948 -3.4415 14 7 4.2470 -2.8275 -1.6067 15 6 4.3473 -4.1157 -2.2887 16 6 4.9857 -5.1930 -1.4737 17 6 4.0957 -5.8106 -0.4215 18 6 3.9783 -4.9472 0.8097 19 6 3.2478 -3.6503 0.5262 20 6 4.0671 -2.6221 -0.1730 21 1 5.0578 -2.6294 0.2816 22 1 -0.4850 0.8400 0.0004 23 1 5.0154 -0.0097 -1.0492 24 1 3.3472 0.2141 -1.6599 25 1 3.3443 -4.4397 -2.5665 26 1 4.9289 -3.9804 -3.2007 27 1 5.3192 -5.9819 -2.1478 28 1 5.8631 -4.7757 -0.9795 29 1 3.1019 -5.9609 -0.8435 30 1 4.5071 -6.7783 -0.1346 31 1 3.4369 -5.4981 1.5787 32 1 4.9781 -4.7174 1.1781 33 1 2.3746 -3.8724 -0.0873 34 1 2.9038 -3.2333 1.4727 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -65.825102 kcal Electronic energy + Delta-G solvation = -16262.054594 eV Core-core repulsion = 13772.253953 eV Total energy + Delta-G solvation = -2489.800640 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73017 -38.62145 -36.84182 -34.82069 -33.96406 -31.65995 -29.36596 -26.85408 -26.10304 -23.32053 -21.86856 -21.32639 -19.72257 -18.86262 -17.88151 -17.15312 -16.45960 -16.18278 -15.65852 -15.15842 -15.05808 -14.89853 -14.47027 -13.95591 -13.66628 -13.37525 -13.14459 -13.06194 -12.64409 -12.45283 -12.06997 -12.02905 -11.66691 -11.49590 -11.46025 -11.12146 -10.93443 -10.82152 -10.63723 -9.46381 -8.26429 -6.31157 1.36481 1.38615 1.45753 1.59577 2.19857 2.35458 3.06259 3.57511 3.81006 3.83070 3.98995 4.11178 4.20983 4.38811 4.42122 4.48438 4.64173 4.67779 4.74849 4.87170 4.96323 5.01705 5.15240 5.22597 5.32109 5.34886 5.41850 5.46908 5.56758 5.69299 5.89713 6.22009 6.30644 6.76599 7.22939 7.34634 8.88869 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.011081 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.470815 B = 2526.324173 C = 3015.717632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.014 3.986 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.224 1.224 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.005 3.995 10 H 0.076 0.924 11 C -0.170 4.170 12 C 0.519 3.481 13 O -0.592 6.592 14 N -0.600 5.600 15 C 0.126 3.874 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.108 4.108 20 C 0.156 3.844 21 H 0.072 0.928 22 H 0.264 0.736 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.919 -9.255 2.916 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.184 4.184 3 Si 0.754 3.246 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.146 1.146 7 C -0.545 4.545 8 H 0.068 0.932 9 C -0.015 4.015 10 H 0.094 0.906 11 C -0.210 4.210 12 C 0.309 3.691 13 O -0.474 6.474 14 N -0.333 5.333 15 C 0.004 3.996 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.146 4.146 20 C 0.053 3.947 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.133 0.867 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.892 -9.214 2.312 15.221 hybrid contribution -0.689 1.137 -0.414 1.392 sum 11.203 -8.077 1.898 13.941 Atomic orbital electron populations 1.70037 1.08249 1.27858 1.52607 1.25836 0.95334 1.02877 0.94333 0.86117 0.80735 0.79340 0.78454 1.20589 1.22303 1.14599 1.21195 0.90312 0.93428 1.49518 0.93188 1.20355 0.94903 0.92389 0.93820 0.90572 1.22892 1.02844 0.97131 0.98099 1.21424 0.73776 0.86369 0.87508 1.90566 1.53392 1.86655 1.16792 1.48384 1.70575 1.05507 1.08813 1.20554 1.00509 0.82763 0.95736 1.20646 0.99388 0.96946 0.98678 1.20850 0.99720 0.99557 0.95183 1.20964 1.01165 0.94612 0.98253 1.20508 0.98311 0.95339 1.00474 1.20420 0.99251 0.95726 0.79295 0.90972 0.92750 0.86728 0.91031 0.94225 0.91154 0.88322 0.91071 0.93315 0.89167 0.90705 0.90760 0.94517 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 2 C 0.01 0.75 5.39 84.65 0.46 1.21 16 3 Si 0.93 42.45 24.66 68.60 1.69 44.14 16 4 H -0.28 -12.93 6.85 99.48 0.68 -12.25 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.22 -8.79 6.63 99.48 0.66 -8.13 16 7 C -0.51 -26.73 8.60 25.60 0.22 -26.51 16 8 H 0.05 2.92 6.29 -2.91 -0.02 2.90 16 9 C 0.00 0.19 2.30 -10.52 -0.02 0.16 16 10 H 0.08 2.91 7.44 -2.39 -0.02 2.89 16 11 C -0.17 -7.10 5.06 30.60 0.15 -6.94 16 12 C 0.52 22.83 8.00 87.69 0.70 23.54 16 13 O -0.59 -29.39 17.47 -3.02 -0.05 -29.44 16 14 N -0.60 -22.39 3.26 -810.10 -2.64 -25.03 16 15 C 0.13 3.88 5.95 85.31 0.51 4.39 16 16 C -0.12 -2.56 5.14 28.80 0.15 -2.42 16 17 C -0.12 -2.38 5.47 29.25 0.16 -2.22 16 18 C -0.11 -2.58 5.50 29.41 0.16 -2.42 16 19 C -0.11 -3.52 3.60 28.81 0.10 -3.42 16 20 C 0.16 5.45 2.48 44.20 0.11 5.56 16 21 H 0.07 2.12 7.85 -2.38 -0.02 2.10 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 24 H 0.07 3.37 4.81 -2.39 -0.01 3.35 16 25 H 0.04 1.31 7.97 -2.39 -0.02 1.29 16 26 H 0.07 2.20 7.77 -2.39 -0.02 2.18 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 29 H 0.05 1.14 7.90 -2.39 -0.02 1.12 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.47 7.83 -2.39 -0.02 1.46 16 33 H 0.04 1.42 7.08 -2.39 -0.02 1.40 16 34 H 0.07 2.55 7.75 -2.39 -0.02 2.53 16 Total: -1.00 -67.80 258.96 3.00 -64.80 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.00 Total: 12.31 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 2.70 Total: -9.07 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.34 Total: -82.73 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.69 Total: 44.14 kcal Total: -67.80 3.00 -64.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.028 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds