Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.61232 * 302.80555 * 9 7 2 11 11 C 1.54411 * 110.69429 * 66.06657 * 9 7 2 12 12 C 1.51318 * 104.28358 * 94.61027 * 11 9 7 13 13 O 1.21280 * 124.81356 * 199.46544 * 12 11 9 14 14 N 1.32470 * 110.37233 * 19.45895 * 12 11 9 15 15 C 1.45842 * 131.57886 * 172.89619 * 14 12 11 16 16 C 1.53452 * 112.88926 * 292.70719 * 15 14 12 17 17 C 1.58481 * 104.59989 * 305.74077 * 16 15 14 18 18 C 1.50193 * 108.60858 * 332.79962 * 17 16 15 19 19 C 1.51217 * 111.49956 * 97.53466 * 18 17 16 20 20 C 1.50847 * 111.70975 * 353.71408 * 14 12 11 21 21 H 1.08995 * 113.77147 * 226.27216 * 20 14 12 22 22 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.46889 * 213.31006 * 11 9 7 24 24 H 1.08998 * 110.47055 * 335.91128 * 11 9 7 25 25 H 1.09000 * 108.79701 * 53.58439 * 15 14 12 26 26 H 1.08998 * 108.80011 * 171.82668 * 15 14 12 27 27 H 1.09002 * 110.40195 * 64.50556 * 16 15 14 28 28 H 1.08996 * 110.40067 * 186.79763 * 16 15 14 29 29 H 1.08993 * 109.61692 * 92.54178 * 17 16 15 30 30 H 1.09003 * 109.61095 * 212.89155 * 17 16 15 31 31 H 1.08995 * 109.07969 * 218.05399 * 18 17 16 32 32 H 1.09006 * 109.07700 * 337.08567 * 18 17 16 33 33 H 1.09000 * 108.62755 * 146.41795 * 19 18 17 34 34 H 1.09005 * 108.62321 * 28.62734 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.5807 -2.5554 0.8573 11 6 0.4701 -2.6785 -1.3206 12 6 1.3976 -3.4936 -2.1952 13 8 1.3203 -3.5708 -3.4031 14 7 2.3061 -4.1108 -1.4545 15 6 3.3199 -5.1029 -1.7935 16 6 2.7191 -6.4539 -2.2041 17 6 1.7693 -6.8514 -0.9993 18 6 2.2918 -6.2104 0.2545 19 6 1.5606 -4.9238 0.5653 20 6 2.2260 -3.6903 -0.0080 21 1 3.1937 -3.4569 0.4359 22 1 -0.4851 0.8401 0.0004 23 1 -0.4596 -3.2191 -1.1431 24 1 0.2677 -1.7102 -1.7782 25 1 3.9227 -4.7215 -2.6177 26 1 3.9663 -5.2541 -0.9291 27 1 2.1431 -6.3499 -3.1236 28 1 3.5064 -7.1967 -2.3318 29 1 0.7582 -6.4962 -1.1979 30 1 1.7601 -7.9351 -0.8828 31 1 2.1654 -6.9020 1.0875 32 1 3.3528 -5.9946 0.1288 33 1 1.4956 -4.8130 1.6477 34 1 0.5495 -4.9923 0.1639 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259683226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -28.643125 kcal Electronic energy + Delta-G solvation = -16264.891634 eV Core-core repulsion = 13776.703325 eV Total energy + Delta-G solvation = -2488.188309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.28556 -36.82082 -35.05707 -32.62462 -31.92741 -29.37221 -27.33139 -25.22714 -24.39306 -22.35303 -20.17125 -19.86778 -18.07808 -16.52898 -15.69586 -15.65064 -14.78614 -14.49463 -14.22273 -13.88659 -13.15336 -12.93489 -12.63379 -12.30636 -11.89463 -11.63927 -11.57315 -10.98145 -10.92920 -10.80287 -10.68867 -10.47336 -10.30498 -10.24274 -9.99062 -9.40408 -9.09697 -8.82726 -8.38962 -7.89963 -6.12600 -4.18660 3.28591 3.33866 3.36422 3.64840 3.81489 4.36282 4.87452 4.99921 5.09896 5.20882 5.33586 5.47796 5.62831 5.73565 5.83570 5.87608 5.95775 6.11717 6.22903 6.24422 6.37560 6.43810 6.46799 6.50818 6.63276 6.66323 6.76101 7.37666 7.40249 7.60240 7.81477 8.12248 8.23658 8.82616 9.22954 9.47624 10.95875 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040857 B = 0.009019 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.154935 B = 3103.689675 C = 3270.395220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.054 0.946 11 C -0.132 4.132 12 C 0.534 3.466 13 O -0.574 6.574 14 N -0.613 5.613 15 C 0.119 3.881 16 C -0.138 4.138 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.130 4.130 20 C 0.130 3.870 21 H 0.094 0.906 22 H 0.264 0.736 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -10.529 2.102 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.032 3.968 10 H 0.072 0.928 11 C -0.173 4.173 12 C 0.324 3.676 13 O -0.455 6.455 14 N -0.346 5.346 15 C -0.004 4.004 16 C -0.177 4.177 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.168 4.168 20 C 0.028 3.972 21 H 0.112 0.888 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.124 0.876 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.026 -10.483 1.400 11.316 hybrid contribution 0.449 0.897 -0.032 1.003 sum 4.475 -9.586 1.367 10.667 Atomic orbital electron populations 1.69927 1.05893 1.27122 1.49327 1.24958 0.94889 0.99238 0.94631 0.86628 0.79653 0.82928 0.78688 1.20212 1.21182 1.20150 1.21006 0.92869 0.89891 1.51981 0.92343 1.19449 0.92440 0.91116 0.93795 0.92773 1.22360 0.96195 1.00321 0.98397 1.20765 0.81411 0.78306 0.87133 1.90576 1.74821 1.66022 1.14095 1.48812 1.34249 1.39875 1.11692 1.21303 0.90301 0.88335 1.00480 1.23051 0.99457 0.96600 0.98590 1.22074 0.99498 0.99045 0.94611 1.20975 1.01467 0.96829 0.97113 1.21580 1.00285 0.94262 1.00690 1.22979 1.00399 0.94581 0.79236 0.88843 0.92622 0.91333 0.87576 0.93073 0.89702 0.91328 0.90933 0.92059 0.92744 0.92767 0.90917 0.92362 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.31 12.26 55.43 0.68 -23.63 16 2 C 0.07 1.74 5.13 -17.82 -0.09 1.65 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.40 8.50 -34.44 -0.29 -13.69 16 8 H 0.06 1.49 7.68 -52.49 -0.40 1.09 16 9 C 0.05 1.16 2.36 -90.54 -0.21 0.95 16 10 H 0.05 1.29 7.98 -51.93 -0.41 0.88 16 11 C -0.13 -3.11 5.67 -26.84 -0.15 -3.27 16 12 C 0.53 12.42 8.09 -11.70 -0.09 12.32 16 13 O -0.57 -15.01 17.97 5.56 0.10 -14.91 16 14 N -0.61 -11.93 2.16 -163.69 -0.35 -12.28 16 15 C 0.12 1.87 5.64 -4.16 -0.02 1.85 16 16 C -0.14 -1.92 6.91 -23.47 -0.16 -2.08 16 17 C -0.11 -1.52 6.05 -25.10 -0.15 -1.68 16 18 C -0.13 -1.64 5.26 -29.03 -0.15 -1.80 16 19 C -0.13 -2.03 4.66 -28.43 -0.13 -2.16 16 20 C 0.13 2.42 3.42 -65.80 -0.23 2.20 16 21 H 0.09 1.68 7.93 -51.93 -0.41 1.27 16 22 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 24 H 0.11 2.84 6.87 -51.93 -0.36 2.49 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.13 5.35 -51.93 -0.28 0.86 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.93 7.29 -51.93 -0.38 0.55 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.90 4.89 -51.93 -0.25 0.64 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.06 6.85 -51.93 -0.36 0.70 16 LS Contribution 265.07 15.07 3.99 3.99 Total: -1.00 -29.28 265.07 -7.24 -36.52 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.95 Total: 0.27 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.69 Total: -5.70 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.33 Total: -35.91 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.10 Total: -14.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.28 -7.24 -36.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.874 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds