Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.61232 * 302.80555 * 9 7 2 11 11 C 1.54411 * 110.69429 * 66.06657 * 9 7 2 12 12 C 1.51318 * 104.28358 * 94.61027 * 11 9 7 13 13 O 1.21280 * 124.81356 * 199.46544 * 12 11 9 14 14 N 1.32470 * 110.37233 * 19.45895 * 12 11 9 15 15 C 1.45842 * 131.57886 * 172.89619 * 14 12 11 16 16 C 1.53452 * 112.88926 * 292.70719 * 15 14 12 17 17 C 1.58481 * 104.59989 * 305.74077 * 16 15 14 18 18 C 1.50193 * 108.60858 * 332.79962 * 17 16 15 19 19 C 1.51217 * 111.49956 * 97.53466 * 18 17 16 20 20 C 1.50847 * 111.70975 * 353.71408 * 14 12 11 21 21 H 1.08995 * 113.77147 * 226.27216 * 20 14 12 22 22 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.46889 * 213.31006 * 11 9 7 24 24 H 1.08998 * 110.47055 * 335.91128 * 11 9 7 25 25 H 1.09000 * 108.79701 * 53.58439 * 15 14 12 26 26 H 1.08998 * 108.80011 * 171.82668 * 15 14 12 27 27 H 1.09002 * 110.40195 * 64.50556 * 16 15 14 28 28 H 1.08996 * 110.40067 * 186.79763 * 16 15 14 29 29 H 1.08993 * 109.61692 * 92.54178 * 17 16 15 30 30 H 1.09003 * 109.61095 * 212.89155 * 17 16 15 31 31 H 1.08995 * 109.07969 * 218.05399 * 18 17 16 32 32 H 1.09006 * 109.07700 * 337.08567 * 18 17 16 33 33 H 1.09000 * 108.62755 * 146.41795 * 19 18 17 34 34 H 1.09005 * 108.62321 * 28.62734 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.5807 -2.5554 0.8573 11 6 0.4701 -2.6785 -1.3206 12 6 1.3976 -3.4936 -2.1952 13 8 1.3203 -3.5708 -3.4031 14 7 2.3061 -4.1108 -1.4545 15 6 3.3199 -5.1029 -1.7935 16 6 2.7191 -6.4539 -2.2041 17 6 1.7693 -6.8514 -0.9993 18 6 2.2918 -6.2104 0.2545 19 6 1.5606 -4.9238 0.5653 20 6 2.2260 -3.6903 -0.0080 21 1 3.1937 -3.4569 0.4359 22 1 -0.4851 0.8401 0.0004 23 1 -0.4596 -3.2191 -1.1431 24 1 0.2677 -1.7102 -1.7782 25 1 3.9227 -4.7215 -2.6177 26 1 3.9663 -5.2541 -0.9291 27 1 2.1431 -6.3499 -3.1236 28 1 3.5064 -7.1967 -2.3318 29 1 0.7582 -6.4962 -1.1979 30 1 1.7601 -7.9351 -0.8828 31 1 2.1654 -6.9020 1.0875 32 1 3.3528 -5.9946 0.1288 33 1 1.4956 -4.8130 1.6477 34 1 0.5495 -4.9923 0.1639 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259683226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -45.645909 kcal Electronic energy + Delta-G solvation = -16265.628930 eV Core-core repulsion = 13776.703325 eV Total energy + Delta-G solvation = -2488.925605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.87478 -38.45391 -36.69530 -34.42135 -33.37039 -30.99314 -28.97056 -26.96243 -25.76656 -23.82575 -21.89209 -21.15141 -19.66250 -18.43432 -17.34671 -17.03600 -16.64092 -16.03631 -15.71000 -15.37124 -14.74032 -14.47090 -14.15300 -13.81650 -13.59594 -13.12866 -13.05074 -12.78068 -12.60552 -12.50650 -12.28850 -12.04208 -11.67380 -11.48679 -11.22387 -11.08371 -10.91828 -10.70922 -10.32805 -9.48720 -8.15628 -6.26719 1.42557 1.44862 1.50881 1.80971 2.27347 2.42310 3.16194 3.61990 3.74742 3.92754 4.13486 4.20489 4.32842 4.36858 4.46682 4.60714 4.74301 4.76816 4.82078 4.86860 4.94023 5.04862 5.25462 5.30659 5.33704 5.40646 5.47868 5.56062 5.65363 5.79563 5.86246 6.24605 6.41317 6.81323 7.41197 7.45853 8.92178 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040857 B = 0.009019 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.154935 B = 3103.689675 C = 3270.395220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.047 3.953 10 H 0.041 0.959 11 C -0.128 4.128 12 C 0.526 3.474 13 O -0.613 6.613 14 N -0.603 5.603 15 C 0.106 3.894 16 C -0.133 4.133 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.125 4.125 20 C 0.135 3.865 21 H 0.111 0.889 22 H 0.263 0.737 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.121 0.879 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -12.208 3.402 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.028 3.972 10 H 0.059 0.941 11 C -0.169 4.169 12 C 0.315 3.685 13 O -0.497 6.497 14 N -0.334 5.334 15 C -0.015 4.015 16 C -0.171 4.171 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.163 4.163 20 C 0.034 3.966 21 H 0.129 0.871 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.014 -12.188 2.741 13.865 hybrid contribution -0.162 1.401 -0.428 1.474 sum 5.852 -10.788 2.312 12.489 Atomic orbital electron populations 1.70038 1.07118 1.27596 1.50462 1.25689 0.95611 1.02342 0.94656 0.85737 0.78502 0.79440 0.78765 1.20684 1.21186 1.18723 1.21387 0.93141 0.91213 1.51122 0.92214 1.19375 0.93014 0.92192 0.92600 0.94084 1.22198 0.97177 0.98669 0.98837 1.20615 0.82356 0.78847 0.86635 1.90541 1.76090 1.67622 1.15491 1.48850 1.33493 1.39473 1.11550 1.21740 0.89625 0.88244 1.01900 1.23047 1.00241 0.96229 0.97581 1.22082 0.97791 1.00813 0.94427 1.20944 1.01587 0.95507 0.97771 1.21510 0.99347 0.94183 1.01299 1.22963 1.00330 0.94296 0.79040 0.87117 0.92845 0.90728 0.91420 0.93888 0.86121 0.94188 0.87140 0.94750 0.89945 0.90090 0.89469 0.90792 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.41 12.26 21.45 0.26 -51.14 16 2 C 0.02 0.91 5.13 84.65 0.43 1.34 16 3 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.53 -27.46 8.50 25.60 0.22 -27.24 16 8 H 0.06 3.01 7.68 -2.91 -0.02 2.98 16 9 C 0.05 2.17 2.36 -10.74 -0.03 2.14 16 10 H 0.04 1.99 7.98 -2.38 -0.02 1.97 16 11 C -0.13 -6.26 5.67 30.52 0.17 -6.08 16 12 C 0.53 24.96 8.09 88.21 0.71 25.67 16 13 O -0.61 -33.04 17.97 -3.03 -0.05 -33.09 16 14 N -0.60 -22.81 2.16 -791.45 -1.71 -24.52 16 15 C 0.11 3.06 5.64 86.66 0.49 3.55 16 16 C -0.13 -3.29 6.91 32.71 0.23 -3.07 16 17 C -0.11 -2.64 6.05 31.65 0.19 -2.45 16 18 C -0.12 -2.61 5.26 29.11 0.15 -2.46 16 19 C -0.13 -3.59 4.66 29.49 0.14 -3.45 16 20 C 0.13 4.80 3.42 43.93 0.15 4.95 16 21 H 0.11 3.62 7.93 -2.39 -0.02 3.61 16 22 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 23 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 24 H 0.07 3.82 6.87 -2.39 -0.02 3.80 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.12 2.65 5.35 -2.39 -0.01 2.63 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 0.99 7.29 -2.39 -0.02 0.97 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.66 4.89 -2.38 -0.01 1.64 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.46 6.85 -2.38 -0.02 1.44 16 Total: -1.00 -65.03 265.07 4.46 -60.57 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.08 Total: 10.51 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 2.86 Total: -7.09 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.45 Total: -75.67 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.05 Total: -33.09 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -65.03 4.46 -60.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259683226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.928 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds