Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48496 * 109.47011 * 274.99249 * 3 2 1 5 5 H 1.48505 * 109.46742 * 34.98809 * 3 2 1 6 6 H 1.48497 * 109.47050 * 154.98979 * 3 2 1 7 7 C 1.37881 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99760 * 189.59330 * 7 2 1 9 9 C 1.50696 * 120.00214 * 9.58533 * 7 2 1 10 10 H 1.08995 * 109.19671 * 306.09365 * 9 7 2 11 11 C 1.51779 * 109.19183 * 65.42089 * 9 7 2 12 12 C 1.51789 * 113.81389 * 53.35512 * 11 9 7 13 13 C 1.53065 * 110.74382 * 66.80453 * 12 11 9 14 14 C 1.51420 * 108.49404 * 275.09123 * 13 12 11 15 15 O 1.21289 * 119.88551 * 250.95287 * 14 13 12 16 16 N 1.33373 * 120.22525 * 71.23330 * 14 13 12 17 17 C 1.47191 * 120.41941 * 0.28028 * 16 14 13 18 18 H 1.09005 * 109.73958 * 168.21567 * 17 16 14 19 19 C 1.53000 * 109.60794 * 47.80080 * 17 16 14 20 20 C 1.53006 * 117.49710 * 122.08164 * 19 17 16 21 21 C 1.52998 * 117.50112 * 53.42356 * 19 17 16 22 22 H 0.96991 * 120.00173 * 0.02562 * 1 2 3 23 23 H 1.08996 * 108.62025 * 292.23504 * 11 9 7 24 24 H 1.09010 * 108.61527 * 174.47432 * 11 9 7 25 25 H 1.09001 * 109.22877 * 306.48618 * 12 11 9 26 26 H 1.09001 * 109.22675 * 187.12820 * 12 11 9 27 27 H 1.08996 * 109.63456 * 155.38443 * 13 12 11 28 28 H 1.09004 * 109.79698 * 34.88316 * 13 12 11 29 29 H 0.96993 * 119.79086 * 180.28176 * 16 14 13 30 30 H 1.09000 * 115.54710 * 267.74490 * 19 17 16 31 31 H 1.08995 * 117.50186 * 0.02562 * 20 19 17 32 32 H 1.09007 * 117.49299 * 145.02111 * 20 19 17 33 33 H 1.08998 * 117.49871 * 214.98036 * 21 19 17 34 34 H 1.09000 * 117.49340 * 359.97336 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2007 0.1554 9 6 1.2668 -2.4900 -0.2184 10 1 0.4500 -2.5624 0.4995 11 6 0.6978 -2.5097 -1.6254 12 6 1.7277 -2.2382 -2.7069 13 6 2.7472 -3.3773 -2.7829 14 6 3.8315 -3.1208 -1.7575 15 8 4.9425 -2.7971 -2.1208 16 7 3.5704 -3.2550 -0.4565 17 6 2.2297 -3.6592 -0.0032 18 1 2.2611 -3.9169 1.0555 19 6 1.7573 -4.8690 -0.8121 20 6 1.3959 -6.1386 -0.0385 21 6 2.6818 -6.0867 -0.8672 22 1 -0.4850 0.8400 -0.0004 23 1 -0.0861 -1.7556 -1.6943 24 1 0.2523 -3.4879 -1.8069 25 1 2.2469 -1.3064 -2.4823 26 1 1.2225 -2.1440 -3.6681 27 1 3.1863 -3.4098 -3.7800 28 1 2.2568 -4.3267 -2.5676 29 1 4.2685 -3.0851 0.1951 30 1 1.1735 -4.6394 -1.7035 31 1 1.4943 -6.1119 1.0467 32 1 0.5746 -6.7446 -0.4214 33 1 2.7062 -6.6586 -1.7948 34 1 3.6269 -6.0258 -0.3275 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = 0.954628 kcal Electronic energy + Delta-G solvation = -16513.708919 eV Core-core repulsion = 14026.804065 eV Total energy + Delta-G solvation = -2486.904854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.13655 -37.19677 -35.11784 -32.93679 -32.36098 -29.86939 -25.88341 -25.34719 -22.81701 -22.15106 -21.40997 -19.04641 -18.30846 -16.73232 -16.17398 -15.46717 -15.18060 -14.55375 -13.97654 -13.65101 -13.00688 -12.95008 -12.51950 -12.47298 -11.89298 -11.58159 -11.30117 -11.03247 -10.90418 -10.74489 -10.35804 -10.22956 -9.75551 -9.64306 -9.44131 -9.37828 -8.99046 -8.69158 -8.34863 -8.00016 -6.06683 -4.05642 3.30136 3.37888 3.43083 3.56798 3.89279 4.40710 4.43886 4.98051 5.20532 5.22383 5.28632 5.49961 5.66430 5.83897 5.89440 5.91317 5.97642 6.11759 6.29158 6.32336 6.36626 6.42350 6.49549 6.68666 6.85044 7.27682 7.31511 7.52412 7.67744 7.77553 7.94712 8.17651 8.38952 8.97009 9.13899 9.57967 11.02675 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030770 B = 0.011673 C = 0.010271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.747102 B = 2398.075559 C = 2725.343881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.061 0.939 9 C 0.034 3.966 10 H 0.046 0.954 11 C -0.107 4.107 12 C -0.100 4.100 13 C -0.160 4.160 14 C 0.537 3.463 15 O -0.588 6.588 16 N -0.693 5.693 17 C 0.175 3.825 18 H 0.077 0.923 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.183 4.183 22 H 0.259 0.741 23 H 0.073 0.927 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.391 0.609 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -9.598 -1.338 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.015 3.985 10 H 0.064 0.936 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.199 4.199 14 C 0.325 3.675 15 O -0.470 6.470 16 N -0.341 5.341 17 C 0.071 3.929 18 H 0.095 0.905 19 C -0.194 4.194 20 C -0.214 4.214 21 C -0.220 4.220 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.226 0.774 30 H 0.152 0.848 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.503 -9.339 -1.647 9.496 hybrid contribution 0.605 1.152 0.282 1.331 sum 1.108 -8.187 -1.364 8.374 Atomic orbital electron populations 1.69941 1.05834 1.26492 1.50422 1.24895 0.94663 0.98870 0.95092 0.86746 0.80157 0.84095 0.78096 1.20738 1.21425 1.19934 1.21137 0.94324 0.90248 1.48883 0.92070 1.18851 0.94185 0.91760 0.93735 0.93564 1.21179 0.98336 0.98893 0.96067 1.21103 0.96326 0.98175 0.98220 1.22500 0.97141 1.02692 0.97579 1.20222 0.88322 0.74995 0.83967 1.90636 1.24912 1.50570 1.80873 1.45684 1.13521 1.68069 1.06837 1.21015 0.83027 0.93051 0.95856 0.90462 1.23520 1.03645 0.89298 1.02945 1.23000 0.98568 1.01214 0.98586 1.22909 0.94806 1.02270 1.02059 0.93092 0.90806 0.95311 0.90651 0.93477 0.90785 0.87866 0.77430 0.84752 0.89036 0.89117 0.89332 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 12.14 55.43 0.67 -23.60 16 2 C 0.07 1.76 5.23 -17.82 -0.09 1.67 16 3 Si 0.88 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.51 -12.83 6.42 -34.44 -0.22 -13.06 16 8 H 0.06 1.59 6.45 -52.48 -0.34 1.25 16 9 C 0.03 0.74 2.19 -92.40 -0.20 0.54 16 10 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 11 C -0.11 -2.22 4.53 -27.97 -0.13 -2.34 16 12 C -0.10 -2.00 5.45 -27.31 -0.15 -2.15 16 13 C -0.16 -2.89 5.53 -27.50 -0.15 -3.05 16 14 C 0.54 11.17 6.38 -11.26 -0.07 11.10 16 15 O -0.59 -14.25 17.92 5.55 0.10 -14.15 16 16 N -0.69 -13.17 3.18 -53.45 -0.17 -13.34 16 17 C 0.18 3.14 3.24 -67.56 -0.22 2.92 16 18 H 0.08 1.31 7.88 -51.93 -0.41 0.90 16 19 C -0.18 -2.64 2.77 -90.62 -0.25 -2.89 16 20 C -0.18 -2.21 10.18 -26.69 -0.27 -2.48 16 21 C -0.18 -2.40 9.47 -26.70 -0.25 -2.66 16 22 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 23 H 0.07 1.75 6.99 -51.93 -0.36 1.38 16 24 H 0.03 0.52 5.51 -51.92 -0.29 0.23 16 25 H 0.07 1.77 6.79 -51.93 -0.35 1.41 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 28 H 0.10 1.64 3.52 -51.93 -0.18 1.46 16 29 H 0.39 7.14 8.85 -40.82 -0.36 6.78 16 30 H 0.14 2.06 3.41 -51.93 -0.18 1.89 16 31 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 260.00 15.07 3.92 3.92 Total: -1.00 -29.00 260.00 -7.07 -36.07 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.55 Total: 7.19 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.01 Total: -12.41 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.50 Total: -36.94 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.10 Total: -14.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.00 -7.07 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.022 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds