Wall clock time and date at job start Mon Mar 30 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48496 * 109.47011 * 274.99249 * 3 2 1 5 5 H 1.48505 * 109.46742 * 34.98809 * 3 2 1 6 6 H 1.48497 * 109.47050 * 154.98979 * 3 2 1 7 7 C 1.37881 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99760 * 189.59330 * 7 2 1 9 9 C 1.50696 * 120.00214 * 9.58533 * 7 2 1 10 10 H 1.08995 * 109.19671 * 306.09365 * 9 7 2 11 11 C 1.51779 * 109.19183 * 65.42089 * 9 7 2 12 12 C 1.51789 * 113.81389 * 53.35512 * 11 9 7 13 13 C 1.53065 * 110.74382 * 66.80453 * 12 11 9 14 14 C 1.51420 * 108.49404 * 275.09123 * 13 12 11 15 15 O 1.21289 * 119.88551 * 250.95287 * 14 13 12 16 16 N 1.33373 * 120.22525 * 71.23330 * 14 13 12 17 17 C 1.47191 * 120.41941 * 0.28028 * 16 14 13 18 18 H 1.09005 * 109.73958 * 168.21567 * 17 16 14 19 19 C 1.53000 * 109.60794 * 47.80080 * 17 16 14 20 20 C 1.53006 * 117.49710 * 122.08164 * 19 17 16 21 21 C 1.52998 * 117.50112 * 53.42356 * 19 17 16 22 22 H 0.96991 * 120.00173 * 0.02562 * 1 2 3 23 23 H 1.08996 * 108.62025 * 292.23504 * 11 9 7 24 24 H 1.09010 * 108.61527 * 174.47432 * 11 9 7 25 25 H 1.09001 * 109.22877 * 306.48618 * 12 11 9 26 26 H 1.09001 * 109.22675 * 187.12820 * 12 11 9 27 27 H 1.08996 * 109.63456 * 155.38443 * 13 12 11 28 28 H 1.09004 * 109.79698 * 34.88316 * 13 12 11 29 29 H 0.96993 * 119.79086 * 180.28176 * 16 14 13 30 30 H 1.09000 * 115.54710 * 267.74490 * 19 17 16 31 31 H 1.08995 * 117.50186 * 0.02562 * 20 19 17 32 32 H 1.09007 * 117.49299 * 145.02111 * 20 19 17 33 33 H 1.08998 * 117.49871 * 214.98036 * 21 19 17 34 34 H 1.09000 * 117.49340 * 359.97336 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2007 0.1554 9 6 1.2668 -2.4900 -0.2184 10 1 0.4500 -2.5624 0.4995 11 6 0.6978 -2.5097 -1.6254 12 6 1.7277 -2.2382 -2.7069 13 6 2.7472 -3.3773 -2.7829 14 6 3.8315 -3.1208 -1.7575 15 8 4.9425 -2.7971 -2.1208 16 7 3.5704 -3.2550 -0.4565 17 6 2.2297 -3.6592 -0.0032 18 1 2.2611 -3.9169 1.0555 19 6 1.7573 -4.8690 -0.8121 20 6 1.3959 -6.1386 -0.0385 21 6 2.6818 -6.0867 -0.8672 22 1 -0.4850 0.8400 -0.0004 23 1 -0.0861 -1.7556 -1.6943 24 1 0.2523 -3.4879 -1.8069 25 1 2.2469 -1.3064 -2.4823 26 1 1.2225 -2.1440 -3.6681 27 1 3.1863 -3.4098 -3.7800 28 1 2.2568 -4.3267 -2.5676 29 1 4.2685 -3.0851 0.1951 30 1 1.1735 -4.6394 -1.7035 31 1 1.4943 -6.1119 1.0467 32 1 0.5746 -6.7446 -0.4214 33 1 2.7062 -6.6586 -1.7948 34 1 3.6269 -6.0258 -0.3275 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:32 Heat of formation + Delta-G solvation = -16.735914 kcal Electronic energy + Delta-G solvation = -16514.476038 eV Core-core repulsion = 14026.804065 eV Total energy + Delta-G solvation = -2487.671973 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65900 -38.72015 -36.57905 -34.53698 -34.20838 -31.60379 -27.36505 -27.23668 -24.44560 -23.19470 -22.84041 -20.58797 -19.87457 -18.35877 -17.95362 -17.07487 -16.73783 -16.20285 -15.64033 -15.09613 -14.62562 -14.43392 -14.22141 -14.08935 -13.56366 -13.25995 -12.88853 -12.59552 -12.52707 -12.25999 -11.94426 -11.82276 -11.36402 -11.28326 -10.93317 -10.81930 -10.62610 -10.38635 -10.29992 -9.61564 -8.11496 -6.11998 1.32378 1.38080 1.44568 1.93367 2.40761 2.59198 3.15054 3.22760 3.80820 3.88275 4.06865 4.21003 4.29991 4.36636 4.52633 4.65104 4.77753 4.85519 4.90665 4.92402 5.04835 5.14205 5.17663 5.36873 5.39135 5.55899 5.65403 5.72073 5.85979 6.07290 6.13698 6.39158 6.66166 6.97720 7.51250 7.54316 8.97057 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030770 B = 0.011673 C = 0.010271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.747102 B = 2398.075559 C = 2725.343881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.921 3.079 4 H -0.286 1.286 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.050 0.950 9 C 0.032 3.968 10 H 0.021 0.979 11 C -0.101 4.101 12 C -0.095 4.095 13 C -0.151 4.151 14 C 0.529 3.471 15 O -0.628 6.628 16 N -0.688 5.688 17 C 0.181 3.819 18 H 0.087 0.913 19 C -0.197 4.197 20 C -0.157 4.157 21 C -0.173 4.173 22 H 0.257 0.743 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.392 0.608 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 -11.671 -1.756 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.749 3.251 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.012 3.988 10 H 0.039 0.961 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.190 4.190 14 C 0.318 3.682 15 O -0.514 6.514 16 N -0.334 5.334 17 C 0.077 3.923 18 H 0.105 0.895 19 C -0.215 4.215 20 C -0.195 4.195 21 C -0.211 4.211 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.152 0.848 29 H 0.226 0.774 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.289 -11.417 -2.041 11.602 hybrid contribution 0.676 1.788 0.466 1.967 sum 0.965 -9.630 -1.575 9.805 Atomic orbital electron populations 1.70014 1.06494 1.26639 1.51961 1.25379 0.95205 1.00918 0.95763 0.86122 0.79152 0.82231 0.77590 1.21296 1.20963 1.20335 1.21425 0.93943 0.91880 1.47223 0.93173 1.18800 0.94007 0.91987 0.93962 0.96077 1.21055 0.97633 0.99680 0.95471 1.21013 0.96312 0.96961 0.99036 1.22516 0.95823 1.03187 0.97455 1.20735 0.88330 0.74386 0.84782 1.90612 1.26704 1.52505 1.81558 1.45758 1.13983 1.67099 1.06579 1.20918 0.81293 0.92834 0.97206 0.89496 1.23259 1.05745 0.89003 1.03471 1.23120 0.98835 0.98671 0.98853 1.22976 0.94707 1.00365 1.03015 0.93336 0.94216 0.91855 0.94828 0.91124 0.89537 0.84849 0.77360 0.84740 0.88558 0.86966 0.87454 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.60 12.14 21.45 0.26 -50.34 16 2 C 0.03 1.41 5.23 84.66 0.44 1.86 16 3 Si 0.92 44.43 29.55 68.60 2.03 46.46 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.51 -25.85 6.42 25.60 0.16 -25.68 16 8 H 0.05 2.63 6.45 -2.91 -0.02 2.61 16 9 C 0.03 1.37 2.19 -11.95 -0.03 1.35 16 10 H 0.02 1.03 8.06 -2.39 -0.02 1.01 16 11 C -0.10 -4.07 4.53 29.79 0.13 -3.93 16 12 C -0.10 -3.68 5.45 30.22 0.16 -3.52 16 13 C -0.15 -5.12 5.53 30.10 0.17 -4.95 16 14 C 0.53 21.43 6.38 88.10 0.56 21.99 16 15 O -0.63 -30.27 17.92 -3.06 -0.05 -30.33 16 16 N -0.69 -25.45 3.18 -442.17 -1.41 -26.85 16 17 C 0.18 6.20 3.24 44.86 0.15 6.34 16 18 H 0.09 2.79 7.88 -2.38 -0.02 2.77 16 19 C -0.20 -5.24 2.77 -10.79 -0.03 -5.27 16 20 C -0.16 -3.27 10.18 30.62 0.31 -2.96 16 21 C -0.17 -3.84 9.47 30.62 0.29 -3.55 16 22 H 0.26 13.89 8.31 -92.71 -0.77 13.11 16 23 H 0.04 1.87 6.99 -2.39 -0.02 1.85 16 24 H 0.06 2.11 5.51 -2.38 -0.01 2.10 16 25 H 0.03 1.57 6.79 -2.39 -0.02 1.55 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.09 2.74 8.13 -2.39 -0.02 2.72 16 28 H 0.13 3.74 3.52 -2.39 -0.01 3.73 16 29 H 0.39 14.13 8.85 -92.71 -0.82 13.31 16 30 H 0.14 3.57 3.41 -2.39 -0.01 3.57 16 31 H 0.10 1.94 8.03 -2.39 -0.02 1.93 16 32 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -63.02 260.00 3.45 -59.57 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.29 Total: 19.82 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 2.33 Total: -18.33 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.15 Total: -77.20 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.33 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.02 3.45 -59.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.838 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds