Wall clock time and date at job start Mon Mar 30 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99610 * 2 1 4 4 C 1.46897 * 111.00103 * 123.95151 * 2 1 3 5 5 H 1.08998 * 109.47369 * 303.99643 * 4 2 1 6 6 C 1.50698 * 109.47193 * 183.98830 * 4 2 1 7 7 H 1.08007 * 120.00127 * 330.47026 * 6 4 2 8 8 C 1.37875 * 120.00047 * 150.18675 * 6 4 2 9 9 N 1.31515 * 119.99921 * 354.19477 * 8 6 4 10 10 Si 1.86799 * 120.00297 * 174.19230 * 8 6 4 11 11 H 1.48503 * 109.46770 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47375 * 120.00173 * 10 8 6 13 13 H 1.48504 * 109.47101 * 240.00815 * 10 8 6 14 14 C 1.50704 * 109.46521 * 63.99495 * 4 2 1 15 15 C 1.38266 * 119.99075 * 39.72566 * 14 4 2 16 16 C 1.38223 * 120.04974 * 179.72704 * 15 14 4 17 17 C 1.38216 * 120.02734 * 0.54556 * 16 15 14 18 18 C 1.38437 * 119.97616 * 359.72445 * 17 16 15 19 19 F 1.35096 * 120.03082 * 180.02562 * 18 17 16 20 20 C 1.38178 * 119.98584 * 219.99724 * 14 4 2 21 21 H 1.08995 * 109.47075 * 299.99886 * 1 2 3 22 22 H 1.09000 * 109.47180 * 59.99882 * 1 2 3 23 23 H 1.09006 * 109.46834 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47450 * 190.54680 * 3 2 1 25 25 H 1.08996 * 109.47616 * 310.55162 * 3 2 1 26 26 H 1.09003 * 109.47259 * 70.55260 * 3 2 1 27 27 H 0.96996 * 120.00034 * 179.97438 * 9 8 6 28 28 H 1.07999 * 119.97226 * 359.97438 * 15 14 4 29 29 H 1.08000 * 119.98678 * 180.27581 * 16 15 14 30 30 H 1.08001 * 120.01702 * 179.71118 * 17 16 15 31 31 H 1.08003 * 120.00987 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5893 -0.3636 2.0656 6 6 3.4987 -0.6622 1.1604 7 1 4.0450 -0.5302 0.2381 8 6 4.1763 -0.7299 2.3593 9 7 3.5077 -0.7700 3.4911 10 14 6.0439 -0.7647 2.3761 11 1 6.5525 -0.7090 0.9820 12 1 6.5540 0.4048 3.1357 13 1 6.5098 -2.0173 3.0237 14 6 1.5939 -2.2118 0.9985 15 6 1.6150 -2.8185 -0.2438 16 6 1.2523 -4.1461 -0.3719 17 6 0.8572 -4.8656 0.7401 18 6 0.8302 -4.2577 1.9836 19 9 0.4447 -4.9600 3.0714 20 6 1.1992 -2.9291 2.1116 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0688 1.3487 -0.1881 25 1 1.5019 1.9501 -0.7808 26 1 1.8061 1.8333 0.9690 27 1 3.9843 -0.8180 4.3345 28 1 1.9190 -2.2557 -1.1140 29 1 1.2734 -4.6203 -1.3420 30 1 0.5693 -5.9016 0.6391 31 1 1.1782 -2.4536 3.0811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259814701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:39 Heat of formation + Delta-G solvation = -18.539592 kcal Electronic energy + Delta-G solvation = -15361.987051 eV Core-core repulsion = 12750.776559 eV Total energy + Delta-G solvation = -2611.210492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.19118 -38.54304 -36.11216 -32.73132 -30.65835 -29.58685 -27.39129 -26.26734 -23.83115 -21.89600 -21.72463 -19.64133 -16.88184 -16.18491 -15.54895 -15.26604 -14.91568 -14.77851 -14.02604 -13.82016 -13.64805 -13.06296 -12.47093 -12.23181 -11.74236 -11.57469 -11.37017 -11.19544 -11.06866 -10.81885 -10.74940 -10.56556 -10.13183 -9.95900 -9.43867 -8.65383 -8.03743 -7.74380 -7.26635 -6.19788 -4.23081 2.03843 2.11384 3.22670 3.31520 3.35288 4.29138 4.49642 4.93304 5.12479 5.20911 5.55627 5.66257 5.96971 6.05005 6.10335 6.13492 6.25754 6.37400 6.47518 6.52766 6.72096 6.84328 6.89974 7.02754 7.17887 7.27474 7.59638 7.66446 7.73997 7.91436 8.10405 8.43887 8.88937 9.41364 10.87319 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.012340 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.066260 B = 2268.440939 C = 3026.756523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.049 3.951 4 C 0.232 3.768 5 H 0.041 0.959 6 C -0.502 4.502 7 H 0.068 0.932 8 C 0.066 3.934 9 N -0.884 5.884 10 Si 0.897 3.103 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.003 3.997 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.186 4.186 18 C 0.081 3.919 19 F -0.154 7.154 20 C -0.146 4.146 21 H 0.013 0.987 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.017 0.983 27 H 0.264 0.736 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -2.021 -5.109 7.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.270 5.270 3 C -0.100 4.100 4 C 0.125 3.875 5 H 0.059 0.941 6 C -0.539 4.539 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.521 5.521 10 Si 0.724 3.276 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.002 3.998 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.205 4.205 18 C 0.062 3.938 19 F -0.133 7.133 20 C -0.165 4.165 21 H 0.032 0.968 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.250 -2.267 -5.290 7.155 hybrid contribution 0.728 0.046 1.201 1.405 sum -3.522 -2.221 -4.089 5.836 Atomic orbital electron populations 1.22339 0.90226 1.01027 0.98910 1.62056 1.05100 1.13565 1.46253 1.22037 1.01277 0.88527 0.98132 1.18517 0.95415 0.85091 0.88429 0.94098 1.20974 0.89601 1.50064 0.93308 0.91395 1.25007 0.98958 0.94318 0.95483 1.69910 1.35771 1.48844 0.97538 0.86452 0.85034 0.77714 0.78399 1.19406 1.20943 1.20808 1.20391 0.89402 0.98937 0.91082 1.21083 1.00087 0.93741 0.98410 1.20870 0.99845 0.94663 0.97272 1.20795 1.07581 1.00254 0.91910 1.17760 1.02379 0.90811 0.82838 1.91408 1.89191 1.78934 1.53793 1.21128 1.02052 0.92290 1.01044 0.96831 0.92967 0.92176 0.90804 0.94120 0.96463 0.92578 0.85358 0.86478 0.86451 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.29 60.07 0.56 0.99 16 2 N -0.55 -11.32 4.14 -246.00 -1.02 -12.34 16 3 C 0.05 0.94 9.09 60.06 0.55 1.49 16 4 C 0.23 5.52 1.74 -70.02 -0.12 5.40 16 5 H 0.04 1.10 7.24 -51.93 -0.38 0.73 16 6 C -0.50 -12.96 7.01 -34.44 -0.24 -13.21 16 7 H 0.07 1.77 7.45 -52.48 -0.39 1.38 16 8 C 0.07 1.75 5.45 -17.82 -0.10 1.65 16 9 N -0.88 -24.27 12.84 55.43 0.71 -23.56 16 10 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.00 0.07 3.77 -104.63 -0.39 -0.32 16 15 C -0.11 -2.29 8.73 -39.58 -0.35 -2.63 16 16 C -0.11 -1.89 10.04 -39.59 -0.40 -2.29 16 17 C -0.19 -3.36 10.03 -39.52 -0.40 -3.75 16 18 C 0.08 1.66 7.30 -39.42 -0.29 1.37 16 19 F -0.15 -3.11 17.27 2.25 0.04 -3.07 16 20 C -0.15 -3.28 9.65 -39.51 -0.38 -3.66 16 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 23 H 0.06 1.08 6.71 -51.93 -0.35 0.73 16 24 H 0.07 1.50 6.94 -51.93 -0.36 1.14 16 25 H 0.04 0.66 8.05 -51.93 -0.42 0.25 16 26 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.13 2.50 7.71 -52.49 -0.40 2.10 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 30 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.13 3.19 8.04 -52.48 -0.42 2.76 16 LS Contribution 268.16 15.07 4.04 4.04 Total: -1.00 -26.98 268.16 -6.77 -33.75 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.97 Total: 0.43 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.56 Total: -14.95 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.31 Total: -35.89 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.98 -6.77 -33.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.215 kcal (2) G-P(sol) polarization free energy of solvation -26.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds