Wall clock time and date at job start Mon Mar 30 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99610 * 2 1 4 4 C 1.46897 * 111.00103 * 123.95151 * 2 1 3 5 5 H 1.08998 * 109.47369 * 303.99643 * 4 2 1 6 6 C 1.50698 * 109.47193 * 183.98830 * 4 2 1 7 7 H 1.08007 * 120.00127 * 330.47026 * 6 4 2 8 8 C 1.37875 * 120.00047 * 150.18675 * 6 4 2 9 9 N 1.31515 * 119.99921 * 354.19477 * 8 6 4 10 10 Si 1.86799 * 120.00297 * 174.19230 * 8 6 4 11 11 H 1.48503 * 109.46770 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47375 * 120.00173 * 10 8 6 13 13 H 1.48504 * 109.47101 * 240.00815 * 10 8 6 14 14 C 1.50704 * 109.46521 * 63.99495 * 4 2 1 15 15 C 1.38266 * 119.99075 * 39.72566 * 14 4 2 16 16 C 1.38223 * 120.04974 * 179.72704 * 15 14 4 17 17 C 1.38216 * 120.02734 * 0.54556 * 16 15 14 18 18 C 1.38437 * 119.97616 * 359.72445 * 17 16 15 19 19 F 1.35096 * 120.03082 * 180.02562 * 18 17 16 20 20 C 1.38178 * 119.98584 * 219.99724 * 14 4 2 21 21 H 1.08995 * 109.47075 * 299.99886 * 1 2 3 22 22 H 1.09000 * 109.47180 * 59.99882 * 1 2 3 23 23 H 1.09006 * 109.46834 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47450 * 190.54680 * 3 2 1 25 25 H 1.08996 * 109.47616 * 310.55162 * 3 2 1 26 26 H 1.09003 * 109.47259 * 70.55260 * 3 2 1 27 27 H 0.96996 * 120.00034 * 179.97438 * 9 8 6 28 28 H 1.07999 * 119.97226 * 359.97438 * 15 14 4 29 29 H 1.08000 * 119.98678 * 180.27581 * 16 15 14 30 30 H 1.08001 * 120.01702 * 179.71118 * 17 16 15 31 31 H 1.08003 * 120.00987 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5893 -0.3636 2.0656 6 6 3.4987 -0.6622 1.1604 7 1 4.0450 -0.5302 0.2381 8 6 4.1763 -0.7299 2.3593 9 7 3.5077 -0.7700 3.4911 10 14 6.0439 -0.7647 2.3761 11 1 6.5525 -0.7090 0.9820 12 1 6.5540 0.4048 3.1357 13 1 6.5098 -2.0173 3.0237 14 6 1.5939 -2.2118 0.9985 15 6 1.6150 -2.8185 -0.2438 16 6 1.2523 -4.1461 -0.3719 17 6 0.8572 -4.8656 0.7401 18 6 0.8302 -4.2577 1.9836 19 9 0.4447 -4.9600 3.0714 20 6 1.1992 -2.9291 2.1116 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.0688 1.3487 -0.1881 25 1 1.5019 1.9501 -0.7808 26 1 1.8061 1.8333 0.9690 27 1 3.9843 -0.8180 4.3345 28 1 1.9190 -2.2557 -1.1140 29 1 1.2734 -4.6203 -1.3420 30 1 0.5693 -5.9016 0.6391 31 1 1.1782 -2.4536 3.0811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:39 Heat of formation + Delta-G solvation = -33.843109 kcal Electronic energy + Delta-G solvation = -15362.650661 eV Core-core repulsion = 12750.776559 eV Total energy + Delta-G solvation = -2611.874102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.78797 -40.16430 -37.74145 -34.66247 -32.29750 -31.17038 -29.14062 -27.88127 -25.66507 -23.48017 -23.28768 -21.35025 -18.72465 -17.88176 -17.20624 -16.83830 -16.65930 -16.46635 -15.59828 -15.52275 -15.36346 -14.54317 -14.09432 -14.01184 -13.45336 -13.16089 -12.93367 -12.89640 -12.82057 -12.46888 -12.41805 -12.20836 -11.84348 -11.74369 -11.24324 -10.66188 -9.64554 -9.34425 -8.98457 -8.19011 -6.28717 0.44777 0.56355 1.38335 1.41494 1.52292 2.37801 2.88504 3.16527 3.32877 3.61856 4.12006 4.14595 4.45594 4.52151 4.59567 4.63915 4.74308 4.79366 4.88752 5.03990 5.16737 5.24038 5.32189 5.38438 5.44260 5.64346 5.65984 5.95900 5.97919 6.23464 6.33243 6.70355 6.90011 7.39085 8.87164 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.012340 C = 0.009249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.066260 B = 2268.440939 C = 3026.756523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.051 3.949 4 C 0.238 3.762 5 H -0.004 1.004 6 C -0.506 4.506 7 H 0.064 0.936 8 C 0.018 3.982 9 N -0.917 5.917 10 Si 0.954 3.046 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.285 1.285 14 C -0.017 4.017 15 C -0.117 4.117 16 C -0.090 4.090 17 C -0.171 4.171 18 C 0.069 3.931 19 F -0.156 7.156 20 C -0.170 4.170 21 H 0.004 0.996 22 H 0.085 0.915 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.078 0.922 26 H -0.003 1.003 27 H 0.262 0.738 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 -3.316 -7.595 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.097 4.097 4 C 0.131 3.869 5 H 0.013 0.987 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.182 4.182 9 N -0.555 5.555 10 Si 0.780 3.220 11 H -0.184 1.184 12 H -0.206 1.206 13 H -0.212 1.212 14 C -0.018 4.018 15 C -0.136 4.136 16 C -0.108 4.108 17 C -0.190 4.190 18 C 0.050 3.950 19 F -0.135 7.135 20 C -0.190 4.190 21 H 0.023 0.977 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.183 0.817 30 H 0.173 0.827 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.345 -3.554 -7.795 9.605 hybrid contribution 0.660 0.434 1.920 2.076 sum -3.685 -3.119 -5.875 7.604 Atomic orbital electron populations 1.22381 0.88395 1.01380 1.00004 1.62056 1.06788 1.13868 1.44261 1.22055 1.01011 0.88316 0.98355 1.18251 0.94403 0.86649 0.87568 0.98668 1.21183 0.90889 1.49356 0.92965 0.91766 1.25729 1.02813 0.94418 0.95282 1.70052 1.37079 1.50501 0.97907 0.85556 0.80451 0.77385 0.78647 1.18397 1.20633 1.21164 1.20245 0.91229 0.98018 0.92308 1.21196 1.00088 0.95122 0.97177 1.21330 0.97022 0.93295 0.99114 1.21226 1.05460 1.01860 0.90433 1.17934 1.02858 0.90184 0.84038 1.91399 1.89227 1.78697 1.54192 1.20976 1.04367 0.93723 0.99909 0.97743 0.89653 0.92287 0.92029 0.90383 0.98400 0.92903 0.84789 0.81736 0.82668 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.29 127.69 1.19 2.13 16 2 N -0.55 -22.46 4.14 -932.21 -3.86 -26.33 16 3 C 0.05 1.96 9.09 127.69 1.16 3.12 16 4 C 0.24 11.69 1.74 43.42 0.08 11.77 16 5 H 0.00 -0.25 7.24 -2.39 -0.02 -0.27 16 6 C -0.51 -26.68 7.01 25.60 0.18 -26.50 16 7 H 0.06 3.36 7.45 -2.91 -0.02 3.34 16 8 C 0.02 0.97 5.45 84.65 0.46 1.43 16 9 N -0.92 -52.69 12.84 21.45 0.28 -52.42 16 10 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 14 C -0.02 -0.75 3.77 -19.87 -0.07 -0.83 16 15 C -0.12 -4.42 8.73 22.27 0.19 -4.23 16 16 C -0.09 -2.75 10.04 22.26 0.22 -2.52 16 17 C -0.17 -5.52 10.03 22.31 0.22 -5.30 16 18 C 0.07 2.76 7.30 22.38 0.16 2.93 16 19 F -0.16 -6.22 17.27 44.97 0.78 -5.45 16 20 C -0.17 -7.88 9.65 22.31 0.22 -7.67 16 21 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 22 H 0.08 2.41 8.12 -2.39 -0.02 2.39 16 23 H 0.06 2.06 6.71 -2.38 -0.02 2.05 16 24 H 0.06 2.49 6.94 -2.39 -0.02 2.47 16 25 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 26 H 0.00 -0.11 8.12 -2.39 -0.02 -0.13 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.13 4.87 7.71 -2.91 -0.02 4.85 16 29 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 31 H 0.10 5.18 8.04 -2.91 -0.02 5.16 16 Total: -1.00 -60.17 268.16 4.33 -55.84 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.11 Total: 8.90 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.01 Total: -25.67 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -3.59 Total: -78.74 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.78 Total: -5.45 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -60.17 4.33 -55.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -60.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds