Wall clock time and date at job start Mon Mar 30 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00180 * 2 1 4 4 H 1.48503 * 109.46943 * 270.00150 * 3 2 1 5 5 H 1.48504 * 109.47052 * 29.99718 * 3 2 1 6 6 H 1.48493 * 109.47060 * 149.99663 * 3 2 1 7 7 C 1.37884 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99966 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99934 * 180.02562 * 7 2 1 10 10 H 1.08995 * 110.53986 * 61.15302 * 9 7 2 11 11 C 1.54620 * 110.48354 * 183.77138 * 9 7 2 12 12 C 1.54303 * 101.84494 * 143.26014 * 11 9 7 13 13 N 1.46765 * 105.56227 * 334.93362 * 12 11 9 14 14 C 1.46497 * 124.34926 * 196.88788 * 13 12 11 15 15 C 1.54267 * 110.48629 * 239.72195 * 14 13 12 16 16 C 1.53876 * 106.59870 * 217.71063 * 15 14 13 17 17 C 1.54261 * 106.59990 * 0.02562 * 16 15 14 18 18 C 1.54888 * 104.19672 * 23.60631 * 17 16 15 19 19 C 1.34424 * 111.30035 * 16.61978 * 13 12 11 20 20 O 1.21276 * 124.94141 * 179.83907 * 19 13 12 21 21 H 0.96997 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.09006 * 110.96782 * 261.58872 * 11 9 7 23 23 H 1.08999 * 110.97950 * 25.35259 * 11 9 7 24 24 H 1.09006 * 110.31365 * 215.84796 * 12 11 9 25 25 H 1.09001 * 110.09727 * 93.90112 * 12 11 9 26 26 H 1.09004 * 110.53983 * 2.33436 * 14 13 12 27 27 H 1.08995 * 110.03032 * 98.42791 * 15 14 13 28 28 H 1.08998 * 110.03405 * 336.99729 * 15 14 13 29 29 H 1.08998 * 110.02768 * 119.28860 * 16 15 14 30 30 H 1.08994 * 110.03051 * 240.71540 * 16 15 14 31 31 H 1.09000 * 110.48928 * 142.28640 * 17 16 15 32 32 H 1.08999 * 110.48469 * 264.93049 * 17 16 15 33 33 H 1.09005 * 110.75648 * 80.37263 * 18 17 16 34 34 H 1.09004 * 110.75897 * 203.55715 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8936 -0.7023 0.8945 11 6 4.0527 -2.6394 -0.0960 12 6 5.2975 -2.4528 -0.9884 13 7 5.0385 -1.2429 -1.7777 14 6 5.7685 -0.8774 -2.9941 15 6 6.4656 0.4873 -2.8159 16 6 6.3529 1.2179 -4.1655 17 6 5.5907 0.2721 -5.1164 18 6 4.7845 -0.6504 -4.1688 19 6 4.0414 -0.5161 -1.2442 20 8 3.6272 0.5310 -1.6946 21 1 -0.4850 0.8400 -0.0004 22 1 4.3283 -3.0189 0.8880 23 1 3.3279 -3.2963 -0.5768 24 1 5.4236 -3.3126 -1.6465 25 1 6.1848 -2.3169 -0.3700 26 1 6.4967 -1.6474 -3.2490 27 1 7.5142 0.3399 -2.5576 28 1 5.9659 1.0629 -2.0368 29 1 5.7985 2.1482 -4.0412 30 1 7.3468 1.4252 -4.5619 31 1 4.9182 0.8391 -5.7602 32 1 6.2899 -0.3125 -5.7142 33 1 3.8784 -0.1525 -3.8235 34 1 4.5421 -1.5925 -4.6607 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259886711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:54 Heat of formation + Delta-G solvation = -36.696252 kcal Electronic energy + Delta-G solvation = -16237.322216 eV Core-core repulsion = 13748.784697 eV Total energy + Delta-G solvation = -2488.537519 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98542 -37.17284 -35.53040 -32.89541 -31.10800 -28.48628 -27.80787 -26.77777 -23.86808 -21.17360 -20.61225 -20.11069 -18.28438 -16.94253 -16.45796 -15.66737 -15.18324 -14.33235 -13.90527 -13.82259 -13.36490 -13.18386 -12.87358 -12.50113 -12.16211 -12.03102 -11.26918 -11.10081 -11.02676 -10.88879 -10.64479 -10.58155 -10.24827 -9.90451 -9.84941 -9.65607 -9.49945 -8.74236 -8.04451 -7.81967 -5.99012 -4.09455 3.46791 3.52089 3.74015 3.82982 4.02529 4.74320 4.80856 4.81797 5.06100 5.22039 5.32379 5.43505 5.50626 5.65678 5.68986 5.73345 5.75358 5.82990 5.90622 6.02623 6.07548 6.20842 6.21321 6.37114 6.45949 6.48179 6.63915 6.70265 7.10445 7.32590 7.58693 7.94228 8.45998 8.93773 9.16302 9.59875 11.08261 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.011959 C = 0.009861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.063001 B = 2340.721793 C = 2838.820713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.953 3.047 4 H -0.259 1.259 5 H -0.333 1.333 6 H -0.297 1.297 7 C -0.523 4.523 8 H 0.078 0.922 9 C -0.014 4.014 10 H 0.062 0.938 11 C -0.117 4.117 12 C 0.105 3.895 13 N -0.626 5.626 14 C 0.154 3.846 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.141 4.141 19 C 0.508 3.492 20 O -0.515 6.515 21 H 0.265 0.735 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.241 -3.020 -6.141 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.266 1.266 6 H -0.224 1.224 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.036 4.036 10 H 0.080 0.920 11 C -0.155 4.155 12 C -0.018 4.018 13 N -0.361 5.361 14 C 0.050 3.950 15 C -0.174 4.174 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.179 4.179 19 C 0.301 3.699 20 O -0.395 6.395 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.903 -2.396 -6.438 15.507 hybrid contribution 0.491 0.709 -0.080 0.866 sum 14.394 -1.687 -6.518 15.890 Atomic orbital electron populations 1.69939 1.06797 1.27587 1.48658 1.25199 0.95023 1.00576 0.92180 0.85556 0.76287 0.81079 0.77934 1.18718 1.26621 1.22415 1.20580 0.86477 0.94953 1.53984 0.90361 1.19972 0.98868 0.92358 0.92384 0.91996 1.22515 0.95325 0.98765 0.98902 1.22003 0.98758 0.87006 0.94017 1.48644 1.36400 1.24976 1.26045 1.21708 0.93048 0.95951 0.84247 1.22486 0.99760 0.96602 0.98568 1.22018 0.99670 0.99004 0.94880 1.22245 0.98514 0.97560 0.97391 1.22917 1.00105 0.99640 0.95229 1.22897 0.76384 0.83435 0.87165 1.90518 1.59951 1.22795 1.66261 0.92599 0.90675 0.90433 0.91758 0.92425 0.89811 0.92200 0.90638 0.91732 0.92285 0.91704 0.92027 0.89044 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.51 13.96 55.43 0.77 -27.74 16 2 C 0.07 2.28 5.42 -17.82 -0.10 2.18 16 3 Si 0.95 26.63 23.73 -169.99 -4.03 22.59 16 4 H -0.26 -7.50 5.86 56.52 0.33 -7.17 16 5 H -0.33 -9.30 7.11 56.52 0.40 -8.90 16 6 H -0.30 -8.05 6.58 56.52 0.37 -7.68 16 7 C -0.52 -15.04 9.12 -34.44 -0.31 -15.36 16 8 H 0.08 2.37 7.88 -52.49 -0.41 1.96 16 9 C -0.01 -0.34 2.39 -91.78 -0.22 -0.56 16 10 H 0.06 1.49 7.32 -51.93 -0.38 1.11 16 11 C -0.12 -2.11 6.67 -25.20 -0.17 -2.28 16 12 C 0.11 1.61 7.32 -3.22 -0.02 1.58 16 13 N -0.63 -11.63 2.93 -163.05 -0.48 -12.11 16 14 C 0.15 2.42 3.53 -66.26 -0.23 2.18 16 15 C -0.14 -2.08 6.31 -25.61 -0.16 -2.24 16 16 C -0.12 -1.61 6.80 -25.61 -0.17 -1.78 16 17 C -0.12 -1.58 6.83 -25.08 -0.17 -1.75 16 18 C -0.14 -2.28 6.37 -24.73 -0.16 -2.44 16 19 C 0.51 11.93 6.09 -10.86 -0.07 11.87 16 20 O -0.52 -13.65 8.63 5.56 0.05 -13.60 16 21 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.08 1.44 7.79 -51.93 -0.40 1.04 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.42 6.70 -51.93 -0.35 1.07 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.88 6.24 -51.93 -0.32 1.56 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 261.27 15.07 3.94 3.94 Total: -1.00 -33.54 261.27 -6.87 -40.41 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -5.33 Total: -4.91 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.79 Total: -8.59 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.30 Total: -39.85 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.05 Total: -13.60 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -4.03 Total: 22.59 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.54 -6.87 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.711 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds