Wall clock time and date at job start Mon Mar 30 2020 02:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00180 * 2 1 4 4 H 1.48503 * 109.46943 * 270.00150 * 3 2 1 5 5 H 1.48504 * 109.47052 * 29.99718 * 3 2 1 6 6 H 1.48493 * 109.47060 * 149.99663 * 3 2 1 7 7 C 1.37884 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99966 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99934 * 180.02562 * 7 2 1 10 10 H 1.08995 * 110.53986 * 61.15302 * 9 7 2 11 11 C 1.54620 * 110.48354 * 183.77138 * 9 7 2 12 12 C 1.54303 * 101.84494 * 143.26014 * 11 9 7 13 13 N 1.46765 * 105.56227 * 334.93362 * 12 11 9 14 14 C 1.46497 * 124.34926 * 196.88788 * 13 12 11 15 15 C 1.54267 * 110.48629 * 239.72195 * 14 13 12 16 16 C 1.53876 * 106.59870 * 217.71063 * 15 14 13 17 17 C 1.54261 * 106.59990 * 0.02562 * 16 15 14 18 18 C 1.54888 * 104.19672 * 23.60631 * 17 16 15 19 19 C 1.34424 * 111.30035 * 16.61978 * 13 12 11 20 20 O 1.21276 * 124.94141 * 179.83907 * 19 13 12 21 21 H 0.96997 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.09006 * 110.96782 * 261.58872 * 11 9 7 23 23 H 1.08999 * 110.97950 * 25.35259 * 11 9 7 24 24 H 1.09006 * 110.31365 * 215.84796 * 12 11 9 25 25 H 1.09001 * 110.09727 * 93.90112 * 12 11 9 26 26 H 1.09004 * 110.53983 * 2.33436 * 14 13 12 27 27 H 1.08995 * 110.03032 * 98.42791 * 15 14 13 28 28 H 1.08998 * 110.03405 * 336.99729 * 15 14 13 29 29 H 1.08998 * 110.02768 * 119.28860 * 16 15 14 30 30 H 1.08994 * 110.03051 * 240.71540 * 16 15 14 31 31 H 1.09000 * 110.48928 * 142.28640 * 17 16 15 32 32 H 1.08999 * 110.48469 * 264.93049 * 17 16 15 33 33 H 1.09005 * 110.75648 * 80.37263 * 18 17 16 34 34 H 1.09004 * 110.75897 * 203.55715 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8936 -0.7023 0.8945 11 6 4.0527 -2.6394 -0.0960 12 6 5.2975 -2.4528 -0.9884 13 7 5.0385 -1.2429 -1.7777 14 6 5.7685 -0.8774 -2.9941 15 6 6.4656 0.4873 -2.8159 16 6 6.3529 1.2179 -4.1655 17 6 5.5907 0.2721 -5.1164 18 6 4.7845 -0.6504 -4.1688 19 6 4.0414 -0.5161 -1.2442 20 8 3.6272 0.5310 -1.6946 21 1 -0.4850 0.8400 -0.0004 22 1 4.3283 -3.0189 0.8880 23 1 3.3279 -3.2963 -0.5768 24 1 5.4236 -3.3126 -1.6465 25 1 6.1848 -2.3169 -0.3700 26 1 6.4967 -1.6474 -3.2490 27 1 7.5142 0.3399 -2.5576 28 1 5.9659 1.0629 -2.0368 29 1 5.7985 2.1482 -4.0412 30 1 7.3468 1.4252 -4.5619 31 1 4.9182 0.8391 -5.7602 32 1 6.2899 -0.3125 -5.7142 33 1 3.8784 -0.1525 -3.8235 34 1 4.5421 -1.5925 -4.6607 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259886711.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:54 Heat of formation + Delta-G solvation = -59.995696 kcal Electronic energy + Delta-G solvation = -16238.332555 eV Core-core repulsion = 13748.784697 eV Total energy + Delta-G solvation = -2489.547858 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56757 -38.49295 -37.21705 -34.99097 -32.84531 -29.65520 -29.46623 -28.14048 -25.78166 -22.54378 -22.18806 -21.30890 -19.93170 -19.08673 -17.91676 -17.12975 -16.62187 -16.17438 -15.70806 -15.26186 -14.87112 -14.78665 -14.55783 -14.20667 -13.84692 -13.49830 -12.65922 -12.54110 -12.28203 -12.16061 -12.10196 -12.00519 -11.84838 -11.77178 -11.59181 -11.49589 -11.32696 -10.99547 -9.88005 -9.47909 -8.36007 -6.45304 1.32238 1.45882 1.67781 1.83732 2.24788 2.47367 3.04113 3.63391 3.67538 3.89592 3.94420 4.03336 4.26671 4.40263 4.44095 4.51172 4.57036 4.57945 4.74644 4.76721 4.90326 4.92734 5.01133 5.14969 5.21483 5.24429 5.26486 5.38168 5.46964 5.51891 5.95446 6.13511 6.29550 6.64329 7.25654 7.42954 8.74724 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.011959 C = 0.009861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.063001 B = 2340.721793 C = 2838.820713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 1.010 2.990 4 H -0.283 1.283 5 H -0.339 1.339 6 H -0.287 1.287 7 C -0.515 4.515 8 H 0.052 0.948 9 C -0.032 4.032 10 H 0.061 0.939 11 C -0.110 4.110 12 C 0.106 3.894 13 N -0.617 5.617 14 C 0.148 3.852 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.111 4.111 18 C -0.147 4.147 19 C 0.496 3.504 20 O -0.554 6.554 21 H 0.265 0.735 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.099 -4.682 -7.051 19.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.175 4.175 3 Si 0.849 3.151 4 H -0.212 1.212 5 H -0.273 1.273 6 H -0.214 1.214 7 C -0.553 4.553 8 H 0.071 0.929 9 C -0.054 4.054 10 H 0.079 0.921 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.350 5.350 14 C 0.046 3.954 15 C -0.174 4.174 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.185 4.185 19 C 0.288 3.712 20 O -0.438 6.438 21 H 0.073 0.927 22 H 0.124 0.876 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.055 0.945 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.816 -4.106 -7.345 19.703 hybrid contribution -0.664 1.114 0.172 1.309 sum 17.151 -2.992 -7.172 18.830 Atomic orbital electron populations 1.70030 1.07994 1.28023 1.51686 1.25875 0.95487 1.03231 0.92907 0.84606 0.75527 0.78465 0.76475 1.21169 1.27269 1.21393 1.20949 0.89626 0.93335 1.51392 0.92937 1.20022 0.95670 0.96788 0.92877 0.92140 1.22501 0.96306 0.94506 1.01465 1.22308 0.98206 0.86723 0.94272 1.48630 1.34716 1.24939 1.26672 1.22104 0.93240 0.97612 0.82401 1.22492 1.00963 0.95896 0.98038 1.22042 1.01210 0.97839 0.94448 1.22249 0.98595 0.97141 0.96890 1.22899 0.98623 1.00412 0.96571 1.22574 0.77868 0.83486 0.87245 1.90446 1.61587 1.24692 1.67049 0.92674 0.87629 0.91497 0.87877 0.88899 0.84935 0.89001 0.95027 0.94299 0.88889 0.92234 0.88351 0.94510 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.33 13.96 21.45 0.30 -62.03 16 2 C 0.02 1.53 5.42 84.66 0.46 1.99 16 3 Si 1.01 57.67 23.73 68.60 1.63 59.30 16 4 H -0.28 -17.00 5.86 99.48 0.58 -16.42 16 5 H -0.34 -19.17 7.11 99.48 0.71 -18.46 16 6 H -0.29 -15.57 6.58 99.48 0.65 -14.91 16 7 C -0.52 -30.37 9.12 25.60 0.23 -30.14 16 8 H 0.05 3.29 7.88 -2.91 -0.02 3.26 16 9 C -0.03 -1.49 2.39 -11.55 -0.03 -1.52 16 10 H 0.06 2.86 7.32 -2.39 -0.02 2.84 16 11 C -0.11 -3.64 6.67 31.59 0.21 -3.43 16 12 C 0.11 2.70 7.32 86.77 0.63 3.33 16 13 N -0.62 -21.08 2.93 -788.37 -2.31 -23.39 16 14 C 0.15 4.09 3.53 46.08 0.16 4.25 16 15 C -0.14 -3.77 6.31 31.32 0.20 -3.57 16 16 C -0.12 -2.91 6.80 31.32 0.21 -2.70 16 17 C -0.11 -2.62 6.83 31.67 0.22 -2.40 16 18 C -0.15 -4.48 6.37 31.89 0.20 -4.28 16 19 C 0.50 23.10 6.09 87.90 0.54 23.63 16 20 O -0.55 -30.12 8.63 -3.02 -0.03 -30.15 16 21 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 22 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 23 H 0.07 2.35 7.79 -2.39 -0.02 2.33 16 24 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.13 2.48 8.10 -2.38 -0.02 2.46 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 1.16 6.70 -2.39 -0.02 1.14 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.54 6.24 -2.38 -0.01 1.52 16 34 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -78.52 261.27 3.52 -75.00 By element: Atomic # 1 Polarization: -4.78 SS G_CDS: 0.89 Total: -3.89 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 3.04 Total: -14.84 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.01 Total: -85.42 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.03 Total: -30.15 kcal Atomic # 14 Polarization: 57.67 SS G_CDS: 1.63 Total: 59.30 kcal Total: -78.52 3.52 -75.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259886711.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.001 kcal (2) G-P(sol) polarization free energy of solvation -78.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds