Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.53000 * 109.47337 * 239.99851 * 2 1 3 5 5 C 1.50707 * 109.47186 * 119.99618 * 2 1 3 6 6 C 1.34326 * 126.16388 * 75.00148 * 5 2 1 7 7 O 1.34753 * 107.11378 * 180.02562 * 6 5 2 8 8 C 1.33963 * 107.75531 * 359.97438 * 7 6 5 9 9 C 1.50701 * 125.62143 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47212 * 270.02887 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 N 1.30257 * 108.76424 * 0.26850 * 8 7 6 20 20 H 1.08999 * 109.47400 * 299.99816 * 1 2 3 21 21 H 1.08998 * 109.47590 * 60.00471 * 1 2 3 22 22 H 1.09007 * 109.46895 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47267 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47007 * 299.99921 * 3 2 1 25 25 H 1.09000 * 109.47315 * 60.00149 * 3 2 1 26 26 H 1.08999 * 109.47082 * 299.99467 * 4 2 1 27 27 H 1.08997 * 109.47015 * 59.99900 * 4 2 1 28 28 H 1.09004 * 109.47111 * 180.02562 * 4 2 1 29 29 H 1.08005 * 126.44486 * 359.97438 * 6 5 2 30 30 H 1.09002 * 109.47060 * 30.02942 * 9 8 7 31 31 H 1.09001 * 109.47380 * 150.03029 * 9 8 7 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 34 34 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 2.0319 -2.0379 1.4351 7 8 2.5633 -2.2514 2.6549 8 6 2.8802 -1.0590 3.1768 9 6 3.5028 -0.8306 4.5301 10 6 2.3999 -0.6627 5.5771 11 6 3.0224 -0.4350 6.9304 12 1 4.0972 -0.4119 7.0334 13 6 2.2198 -0.2551 8.0370 14 7 0.9109 -0.2827 7.9115 15 14 2.9914 0.0265 9.7148 16 1 3.8281 1.2527 9.6752 17 1 1.9210 0.1908 10.7307 18 1 3.8388 -1.1395 10.0718 19 7 2.5568 -0.1290 2.3240 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6767 -1.7490 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7216 -1.2489 29 1 1.6725 -2.7924 0.7510 30 1 4.1257 -1.6858 4.7924 31 1 4.1159 0.0701 4.5007 32 1 1.7770 0.1925 5.3147 33 1 1.7866 -1.5633 5.6066 34 1 0.3463 -0.1558 8.6900 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = -10.588146 kcal Electronic energy + Delta-G solvation = -15033.647197 eV Core-core repulsion = 12546.241811 eV Total energy + Delta-G solvation = -2487.405386 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.86085 -37.21032 -34.31361 -33.37703 -31.61039 -28.67733 -27.29517 -27.15868 -25.30028 -22.70500 -21.93372 -20.27523 -18.90504 -16.81293 -16.35993 -15.92633 -14.92941 -14.48789 -14.12489 -14.03524 -13.59112 -13.33378 -12.76112 -12.41200 -12.28944 -12.02976 -11.64289 -11.33832 -11.12132 -11.06649 -10.95149 -10.85422 -10.73367 -10.40896 -10.03825 -9.93346 -9.72911 -9.23688 -8.38887 -8.19054 -6.03538 -4.07783 1.95357 3.15724 3.30772 3.33274 3.37607 3.40232 4.33679 4.45749 4.77418 5.01344 5.04722 5.32565 5.33679 5.37857 5.54675 5.67780 5.74616 5.86868 5.95079 5.99650 6.02697 6.13942 6.25692 6.33406 6.39412 6.41176 6.53703 6.66190 6.91191 7.58778 7.67745 7.93337 8.30151 8.32307 8.97715 9.56439 11.07769 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050341 B = 0.005386 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.071950 B = 5197.430466 C = 5321.950682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 C -0.129 4.129 4 C -0.138 4.138 5 C -0.001 4.001 6 C -0.102 4.102 7 O -0.204 6.204 8 C 0.225 3.775 9 C -0.024 4.024 10 C 0.029 3.971 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.490 5.490 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.203 0.797 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.026 0.974 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -1.422 -16.100 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.121 4.121 6 C -0.173 4.173 7 O -0.091 6.091 8 C 0.018 3.982 9 C -0.062 4.062 10 C -0.009 4.009 11 C -0.563 4.563 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.219 5.219 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.220 0.780 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.097 -0.800 -15.864 15.922 hybrid contribution 0.075 -0.683 0.755 1.021 sum 1.172 -1.483 -15.110 15.227 Atomic orbital electron populations 1.21890 0.93552 1.01958 1.02188 1.18881 0.95208 0.95404 0.89310 1.21695 1.01222 0.94096 1.01669 1.21906 1.01337 0.99995 0.96361 1.21568 1.03166 0.91070 0.96255 1.24447 1.07167 0.98506 0.87175 1.84474 1.60737 1.36206 1.27660 1.27184 0.96720 0.76555 0.97737 1.20559 0.99726 1.02740 0.83193 1.19118 0.92463 0.98026 0.91312 1.21084 0.93114 1.50047 0.92066 0.92243 1.25013 0.94798 0.95142 0.99310 1.69969 1.03210 1.49565 1.30391 0.86582 0.78797 0.78831 0.83356 1.20104 1.21265 1.20139 1.70381 1.17055 1.32942 1.01523 0.92096 0.92126 0.92654 0.92597 0.93011 0.91599 0.92633 0.91976 0.92432 0.78012 0.90172 0.88752 0.95611 0.96174 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.46 37.15 0.31 -1.30 16 2 C 0.01 0.16 0.95 -155.66 -0.15 0.01 16 3 C -0.13 -1.68 8.05 37.16 0.30 -1.38 16 4 C -0.14 -1.38 8.19 37.16 0.30 -1.08 16 5 C 0.00 -0.01 5.53 -82.81 -0.46 -0.47 16 6 C -0.10 -1.61 11.45 29.35 0.34 -1.28 16 7 O -0.20 -3.90 10.78 5.37 0.06 -3.84 16 8 C 0.22 4.61 7.60 -12.95 -0.10 4.51 16 9 C -0.02 -0.51 5.78 -27.88 -0.16 -0.67 16 10 C 0.03 0.75 4.95 -27.89 -0.14 0.61 16 11 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 N -0.49 -9.84 10.67 -7.35 -0.08 -9.92 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 26 H 0.05 0.49 7.51 -51.93 -0.39 0.10 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.20 2.28 7.66 -52.48 -0.40 1.88 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 289.98 15.07 4.37 4.37 Total: -1.00 -31.25 289.98 -5.50 -36.75 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.40 Total: -3.19 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.16 Total: -14.41 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.66 Total: -36.10 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: 0.06 Total: -3.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.25 -5.50 -36.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.159 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds