Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.53000 * 109.47337 * 239.99851 * 2 1 3 5 5 C 1.50707 * 109.47186 * 119.99618 * 2 1 3 6 6 C 1.34326 * 126.16388 * 75.00148 * 5 2 1 7 7 O 1.34753 * 107.11378 * 180.02562 * 6 5 2 8 8 C 1.33963 * 107.75531 * 359.97438 * 7 6 5 9 9 C 1.50701 * 125.62143 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47212 * 270.02887 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46756 * 59.99920 * 15 13 11 17 17 H 1.48490 * 109.47381 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47117 * 300.00527 * 15 13 11 19 19 N 1.30257 * 108.76424 * 0.26850 * 8 7 6 20 20 H 1.08999 * 109.47400 * 299.99816 * 1 2 3 21 21 H 1.08998 * 109.47590 * 60.00471 * 1 2 3 22 22 H 1.09007 * 109.46895 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47267 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47007 * 299.99921 * 3 2 1 25 25 H 1.09000 * 109.47315 * 60.00149 * 3 2 1 26 26 H 1.08999 * 109.47082 * 299.99467 * 4 2 1 27 27 H 1.08997 * 109.47015 * 59.99900 * 4 2 1 28 28 H 1.09004 * 109.47111 * 180.02562 * 4 2 1 29 29 H 1.08005 * 126.44486 * 359.97438 * 6 5 2 30 30 H 1.09002 * 109.47060 * 30.02942 * 9 8 7 31 31 H 1.09001 * 109.47380 * 150.03029 * 9 8 7 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 34 34 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 6 2.0319 -2.0379 1.4351 7 8 2.5633 -2.2514 2.6549 8 6 2.8802 -1.0590 3.1768 9 6 3.5028 -0.8306 4.5301 10 6 2.3999 -0.6627 5.5771 11 6 3.0224 -0.4350 6.9304 12 1 4.0972 -0.4119 7.0334 13 6 2.2198 -0.2551 8.0370 14 7 0.9109 -0.2827 7.9115 15 14 2.9914 0.0265 9.7148 16 1 3.8281 1.2527 9.6752 17 1 1.9210 0.1908 10.7307 18 1 3.8388 -1.1395 10.0718 19 7 2.5568 -0.1290 2.3240 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6767 -1.7490 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7216 -1.2489 29 1 1.6725 -2.7924 0.7510 30 1 4.1257 -1.6858 4.7924 31 1 4.1159 0.0701 4.5007 32 1 1.7770 0.1925 5.3147 33 1 1.7866 -1.5633 5.6066 34 1 0.3463 -0.1558 8.6900 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = -31.229937 kcal Electronic energy + Delta-G solvation = -15034.542292 eV Core-core repulsion = 12546.241811 eV Total energy + Delta-G solvation = -2488.300481 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.28108 -38.27603 -36.19455 -34.96858 -33.50879 -30.21937 -28.29434 -28.13207 -27.11042 -23.97753 -23.82417 -21.88323 -20.12725 -18.65475 -17.89650 -17.49150 -16.48510 -16.11053 -15.39145 -15.08423 -15.00035 -14.83532 -14.33482 -14.17637 -13.33459 -13.22697 -12.97550 -12.81001 -12.61174 -12.57374 -12.26373 -12.13404 -12.01596 -11.89294 -11.82675 -11.53138 -11.36262 -11.32759 -10.58263 -9.57803 -8.22004 -6.35215 0.55238 1.42818 1.46803 1.54446 1.73915 1.92933 2.42083 3.08824 3.12114 3.68094 3.92312 4.07394 4.16954 4.32091 4.50123 4.57994 4.71195 4.77426 4.80737 4.86935 4.88725 4.99169 5.04196 5.05479 5.10924 5.18928 5.40115 5.42439 5.46752 5.49007 5.55584 5.75388 6.12579 6.79994 6.88344 7.34845 8.90399 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050341 B = 0.005386 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.071950 B = 5197.430466 C = 5321.950682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.010 3.990 3 C -0.127 4.127 4 C -0.133 4.133 5 C -0.019 4.019 6 C -0.089 4.089 7 O -0.215 6.215 8 C 0.193 3.807 9 C -0.009 4.009 10 C 0.038 3.962 11 C -0.544 4.544 12 H 0.074 0.926 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.973 3.027 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.262 1.262 19 N -0.509 5.509 20 H 0.031 0.969 21 H 0.088 0.912 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.250 0.750 30 H 0.097 0.903 31 H 0.100 0.900 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -1.991 -17.417 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 C -0.185 4.185 4 C -0.190 4.190 5 C -0.139 4.139 6 C -0.158 4.158 7 O -0.102 6.102 8 C -0.014 4.014 9 C -0.047 4.047 10 C 0.000 4.000 11 C -0.582 4.582 12 H 0.092 0.908 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.797 3.203 16 H -0.189 1.189 17 H -0.211 1.211 18 H -0.187 1.187 19 N -0.239 5.239 20 H 0.050 0.950 21 H 0.106 0.894 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.266 0.734 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.007 0.993 33 H 0.009 0.991 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.748 -1.379 -17.193 17.337 hybrid contribution -0.192 -0.505 1.044 1.175 sum 1.556 -1.883 -16.150 16.333 Atomic orbital electron populations 1.21890 0.92615 1.02691 1.02137 1.19112 0.95891 0.95077 0.89000 1.21678 1.00540 0.94625 1.01641 1.21883 1.00957 1.00837 0.95337 1.22293 1.03150 0.91857 0.96612 1.25400 1.04863 0.99477 0.86109 1.84452 1.60954 1.35733 1.29081 1.26852 0.99038 0.77368 0.98100 1.20209 0.98062 1.03819 0.82630 1.18888 0.93201 0.94946 0.92941 1.21565 0.94015 1.49702 0.92871 0.90768 1.26053 0.95200 0.94603 1.03990 1.70126 1.04981 1.50710 1.31741 0.85377 0.77941 0.79387 0.77602 1.18946 1.21077 1.18700 1.70347 1.17098 1.33711 1.02761 0.94960 0.89356 0.91550 0.93617 0.90056 0.94548 0.90989 0.89639 0.93049 0.73365 0.88487 0.88131 0.99269 0.99083 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.46 71.98 0.61 -2.29 16 2 C 0.01 0.24 0.95 -52.93 -0.05 0.19 16 3 C -0.13 -3.20 8.05 71.98 0.58 -2.62 16 4 C -0.13 -2.18 8.19 71.98 0.59 -1.59 16 5 C -0.02 -0.63 5.53 41.26 0.23 -0.40 16 6 C -0.09 -2.65 11.45 66.93 0.77 -1.88 16 7 O -0.22 -8.19 10.78 -3.70 -0.04 -8.23 16 8 C 0.19 8.08 7.60 88.34 0.67 8.75 16 9 C -0.01 -0.40 5.78 29.85 0.17 -0.23 16 10 C 0.04 2.10 4.95 29.85 0.15 2.24 16 11 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 12 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 13 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 14 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 15 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 16 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 19 N -0.51 -20.85 10.67 -291.97 -3.11 -23.97 16 20 H 0.03 0.85 8.14 -2.39 -0.02 0.84 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.10 8.09 -2.39 -0.02 1.08 16 26 H 0.07 0.95 7.51 -2.39 -0.02 0.93 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.25 4.63 7.66 -2.91 -0.02 4.61 16 30 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 32 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -69.98 289.98 4.62 -65.36 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.05 Total: 6.48 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.41 Total: -28.03 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.83 Total: -81.66 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.04 Total: -8.23 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.98 4.62 -65.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.128 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds