Wall clock time and date at job start Mon Mar 30 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.63608 * 59.29688 * 9 7 2 11 11 C 1.55153 * 110.71936 * 296.15931 * 9 7 2 12 12 C 1.54908 * 101.58429 * 206.13391 * 11 9 7 13 13 N 1.47425 * 104.82888 * 37.00574 * 12 11 9 14 14 C 1.34773 * 125.64814 * 155.84015 * 13 12 11 15 15 O 1.21280 * 120.00370 * 180.02562 * 14 13 12 16 16 C 1.50709 * 119.99939 * 0.02562 * 14 13 12 17 17 C 1.53777 * 113.61610 * 277.49999 * 16 14 13 18 18 C 1.53780 * 87.08068 * 220.01777 * 17 16 14 19 19 C 1.53776 * 87.08145 * 25.43342 * 18 17 16 20 20 C 1.47318 * 108.73995 * 335.71889 * 13 12 11 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 111.00325 * 324.20857 * 11 9 7 23 23 H 1.09003 * 111.00762 * 88.05587 * 11 9 7 24 24 H 1.08992 * 110.37119 * 155.84860 * 12 11 9 25 25 H 1.09000 * 110.36333 * 278.06210 * 12 11 9 26 26 H 1.08997 * 112.84754 * 48.80600 * 16 14 13 27 27 H 1.09005 * 113.61595 * 334.56452 * 17 16 14 28 28 H 1.09007 * 113.61621 * 105.46671 * 17 16 14 29 29 H 1.09001 * 113.61407 * 270.88369 * 18 17 16 30 30 H 1.08999 * 113.69071 * 139.99241 * 18 17 16 31 31 H 1.09006 * 113.61179 * 220.02369 * 19 18 17 32 32 H 1.09001 * 113.69300 * 89.12743 * 19 18 17 33 33 H 1.09006 * 110.06265 * 241.87373 * 20 13 12 34 34 H 1.08991 * 109.85162 * 120.60916 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6083 -2.5717 -0.8768 11 6 0.4221 -2.6544 1.3028 12 6 0.3225 -4.1953 1.4263 13 7 1.6281 -4.6964 0.9597 14 6 2.1815 -5.8784 1.2958 15 8 3.2660 -6.1888 0.8505 16 6 1.4526 -6.8146 2.2252 17 6 1.6386 -6.4740 3.7131 18 6 1.7412 -7.9874 3.9659 19 6 2.2162 -8.1188 2.5092 20 6 2.2270 -3.6930 0.0626 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9502 -2.2274 2.1554 23 1 -0.5656 -2.2066 1.1930 24 1 0.1547 -4.4827 2.4642 25 1 -0.4797 -4.5755 0.7938 26 1 0.4128 -6.9711 1.9383 27 1 2.5605 -5.9324 3.9252 28 1 0.7618 -6.0136 4.1687 29 1 0.7798 -8.4644 4.1563 30 1 2.5008 -8.2585 4.6990 31 1 1.8056 -8.9865 1.9927 32 1 3.2959 -8.0274 2.3907 33 1 2.3609 -4.1146 -0.9336 34 1 3.1873 -3.3664 0.4614 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259932162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:02 Heat of formation + Delta-G solvation = -29.001232 kcal Electronic energy + Delta-G solvation = -15498.766570 eV Core-core repulsion = 13010.562732 eV Total energy + Delta-G solvation = -2488.203837 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07438 -37.87795 -36.46150 -33.32432 -30.22792 -28.62909 -26.66569 -25.64835 -24.18987 -22.59221 -20.29272 -19.65327 -18.60022 -17.32247 -16.62642 -15.65930 -15.38876 -15.15996 -13.83025 -13.79161 -13.29669 -12.84514 -12.52679 -12.34311 -12.11577 -12.00418 -11.82782 -11.41566 -11.08447 -10.94609 -10.74492 -10.56445 -10.41280 -10.15162 -9.95753 -9.76500 -9.28347 -8.61286 -8.44602 -8.07162 -6.42204 -4.15715 2.98611 3.41501 3.42445 3.51242 3.61447 4.47956 4.51888 4.60398 4.71187 4.79421 5.13517 5.27750 5.45039 5.52279 5.61460 5.74075 5.75291 5.79021 5.84279 5.90608 6.05385 6.10858 6.17490 6.38673 6.50090 6.68859 6.77595 6.88879 7.06968 7.46016 8.07262 8.09196 8.34759 8.59943 8.78647 9.55559 10.95540 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.053816 B = 0.006263 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.165690 B = 4469.392977 C = 4613.113274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.594 4.594 8 H 0.052 0.948 9 C 0.027 3.973 10 H 0.031 0.969 11 C -0.125 4.125 12 C 0.096 3.904 13 N -0.610 5.610 14 C 0.529 3.471 15 O -0.556 6.556 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.141 4.141 19 C -0.118 4.118 20 C 0.118 3.882 21 H 0.271 0.729 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -11.484 6.716 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.181 4.181 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.632 4.632 8 H 0.071 0.929 9 C 0.008 3.992 10 H 0.049 0.951 11 C -0.163 4.163 12 C -0.027 4.027 13 N -0.343 5.343 14 C 0.317 3.683 15 O -0.435 6.435 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.178 4.178 19 C -0.155 4.155 20 C -0.004 4.004 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.477 -10.058 6.486 11.977 hybrid contribution 0.052 -1.615 -0.067 1.617 sum -0.425 -11.673 6.419 13.328 Atomic orbital electron populations 1.70832 1.06828 1.30893 1.46077 1.25797 0.96493 1.02533 0.93325 0.83545 0.74915 0.75270 0.76647 1.20749 1.21420 1.21374 1.21874 0.94168 0.90859 1.56332 0.92938 1.19882 0.93222 0.92891 0.93208 0.95062 1.23001 1.01479 0.90529 1.01324 1.22452 0.84679 0.97298 0.98270 1.48799 1.20710 1.17535 1.47217 1.20121 0.85726 0.81023 0.81418 1.90638 1.21706 1.75295 1.55840 1.22735 1.00806 0.96603 0.95405 1.22802 1.02809 0.97033 0.93376 1.22825 1.01607 0.96179 0.97237 1.22794 1.01513 0.95589 0.95651 1.22233 0.98275 0.88131 0.91716 0.91714 0.91443 0.90821 0.91814 0.92351 0.87432 0.89698 0.90778 0.90053 0.91135 0.91296 0.88781 0.93251 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.02 13.45 55.43 0.75 -25.27 16 2 C 0.02 0.63 5.35 -17.82 -0.10 0.54 16 3 Si 1.07 24.47 29.90 -169.99 -5.08 19.39 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.59 -16.13 8.48 -34.44 -0.29 -16.42 16 8 H 0.05 1.44 7.55 -52.48 -0.40 1.04 16 9 C 0.03 0.65 2.46 -89.94 -0.22 0.43 16 10 H 0.03 0.79 8.00 -51.93 -0.42 0.38 16 11 C -0.12 -2.64 5.77 -24.58 -0.14 -2.78 16 12 C 0.10 1.66 6.66 -2.53 -0.02 1.64 16 13 N -0.61 -11.92 3.33 -170.29 -0.57 -12.49 16 14 C 0.53 9.89 7.38 -10.98 -0.08 9.81 16 15 O -0.56 -12.25 16.23 5.56 0.09 -12.16 16 16 C -0.13 -1.84 3.14 -90.96 -0.29 -2.13 16 17 C -0.12 -1.45 7.21 -25.92 -0.19 -1.64 16 18 C -0.14 -1.40 8.08 -25.92 -0.21 -1.61 16 19 C -0.12 -1.44 7.41 -25.92 -0.19 -1.63 16 20 C 0.12 2.64 6.48 -2.90 -0.02 2.62 16 21 H 0.27 7.54 5.45 -40.82 -0.22 7.32 16 22 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 23 H 0.07 1.58 6.61 -51.93 -0.34 1.24 16 24 H 0.06 0.94 7.22 -51.93 -0.37 0.56 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.11 1.29 8.09 -51.93 -0.42 0.87 16 27 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 28 H 0.07 0.78 8.05 -51.92 -0.42 0.36 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.31 7.43 -51.93 -0.39 0.93 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.49 7.64 -51.93 -0.40 1.09 16 LS Contribution 275.53 15.07 4.15 4.15 Total: -1.00 -30.42 275.53 -7.52 -37.94 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.12 Total: -0.39 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.74 Total: -11.17 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.18 Total: -37.76 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.42 -7.52 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259932162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.942 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds