Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.63608 * 59.29688 * 9 7 2 11 11 C 1.55153 * 110.71936 * 296.15931 * 9 7 2 12 12 C 1.54908 * 101.58429 * 206.13391 * 11 9 7 13 13 N 1.47425 * 104.82888 * 37.00574 * 12 11 9 14 14 C 1.34773 * 125.64814 * 155.84015 * 13 12 11 15 15 O 1.21280 * 120.00370 * 180.02562 * 14 13 12 16 16 C 1.50709 * 119.99939 * 0.02562 * 14 13 12 17 17 C 1.53777 * 113.61610 * 277.49999 * 16 14 13 18 18 C 1.53780 * 87.08068 * 220.01777 * 17 16 14 19 19 C 1.53776 * 87.08145 * 25.43342 * 18 17 16 20 20 C 1.47318 * 108.73995 * 335.71889 * 13 12 11 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 111.00325 * 324.20857 * 11 9 7 23 23 H 1.09003 * 111.00762 * 88.05587 * 11 9 7 24 24 H 1.08992 * 110.37119 * 155.84860 * 12 11 9 25 25 H 1.09000 * 110.36333 * 278.06210 * 12 11 9 26 26 H 1.08997 * 112.84754 * 48.80600 * 16 14 13 27 27 H 1.09005 * 113.61595 * 334.56452 * 17 16 14 28 28 H 1.09007 * 113.61621 * 105.46671 * 17 16 14 29 29 H 1.09001 * 113.61407 * 270.88369 * 18 17 16 30 30 H 1.08999 * 113.69071 * 139.99241 * 18 17 16 31 31 H 1.09006 * 113.61179 * 220.02369 * 19 18 17 32 32 H 1.09001 * 113.69300 * 89.12743 * 19 18 17 33 33 H 1.09006 * 110.06265 * 241.87373 * 20 13 12 34 34 H 1.08991 * 109.85162 * 120.60916 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6083 -2.5717 -0.8768 11 6 0.4221 -2.6544 1.3028 12 6 0.3225 -4.1953 1.4263 13 7 1.6281 -4.6964 0.9597 14 6 2.1815 -5.8784 1.2958 15 8 3.2660 -6.1888 0.8505 16 6 1.4526 -6.8146 2.2252 17 6 1.6386 -6.4740 3.7131 18 6 1.7412 -7.9874 3.9659 19 6 2.2162 -8.1188 2.5092 20 6 2.2270 -3.6930 0.0626 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9502 -2.2274 2.1554 23 1 -0.5656 -2.2066 1.1930 24 1 0.1547 -4.4827 2.4642 25 1 -0.4797 -4.5755 0.7938 26 1 0.4128 -6.9711 1.9383 27 1 2.5605 -5.9324 3.9252 28 1 0.7618 -6.0136 4.1687 29 1 0.7798 -8.4644 4.1563 30 1 2.5008 -8.2585 4.6990 31 1 1.8056 -8.9865 1.9927 32 1 3.2959 -8.0274 2.3907 33 1 2.3609 -4.1146 -0.9336 34 1 3.1873 -3.3664 0.4614 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259932162.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = -47.119936 kcal Electronic energy + Delta-G solvation = -15499.552256 eV Core-core repulsion = 13010.562732 eV Total energy + Delta-G solvation = -2488.989523 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.44282 -39.27050 -37.94369 -35.28131 -32.02709 -30.30642 -27.98390 -26.59614 -26.04798 -24.14869 -21.92503 -21.02183 -19.87392 -19.12587 -18.22297 -17.32211 -16.65857 -16.37920 -15.66533 -15.40664 -14.65360 -14.35436 -14.12275 -13.77378 -13.58125 -13.44993 -13.28258 -12.90065 -12.73842 -12.50873 -12.14966 -11.94820 -11.76312 -11.66194 -11.44973 -11.30931 -10.78840 -10.61186 -10.50496 -9.69778 -8.60753 -6.34973 1.53883 1.55195 1.61070 1.81168 2.01586 2.56700 3.17224 3.44792 3.60747 3.68036 3.88021 3.89856 3.99101 4.20515 4.25367 4.32683 4.54668 4.61282 4.66833 4.77125 4.84276 4.89600 5.00260 5.05902 5.08225 5.16465 5.18282 5.24116 5.50875 5.56251 6.02433 6.16540 6.56194 6.64708 7.09435 7.42518 8.78851 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.053816 B = 0.006263 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.165690 B = 4469.392977 C = 4613.113274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.019 4.019 3 Si 1.110 2.890 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.613 4.613 8 H 0.039 0.961 9 C 0.020 3.980 10 H 0.014 0.986 11 C -0.116 4.116 12 C 0.107 3.893 13 N -0.615 5.615 14 C 0.522 3.478 15 O -0.598 6.598 16 C -0.134 4.134 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.123 4.123 20 C 0.127 3.873 21 H 0.266 0.734 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -12.636 8.232 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.933 3.067 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.651 4.651 8 H 0.058 0.942 9 C 0.000 4.000 10 H 0.032 0.968 11 C -0.155 4.155 12 C -0.015 4.015 13 N -0.347 5.347 14 C 0.313 3.687 15 O -0.479 6.479 16 C -0.154 4.154 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.161 4.161 20 C 0.004 3.996 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.631 -11.238 8.016 13.900 hybrid contribution 0.446 -1.288 -0.583 1.482 sum -1.185 -12.526 7.433 14.613 Atomic orbital electron populations 1.70919 1.07456 1.30766 1.47561 1.27041 0.96664 1.05666 0.92495 0.82992 0.74219 0.71888 0.77599 1.20565 1.20006 1.20155 1.22183 0.93899 0.92652 1.56372 0.94221 1.19822 0.93586 0.92426 0.94122 0.96781 1.22773 1.00196 0.93796 0.98702 1.22496 0.84028 0.93948 1.00997 1.48900 1.21423 1.17486 1.46880 1.21196 0.85437 0.80901 0.81186 1.90614 1.23798 1.76095 1.57433 1.22970 1.01654 0.95829 0.94977 1.22845 1.02802 0.98702 0.91804 1.22794 1.03134 0.94391 0.95517 1.22821 0.99954 0.95408 0.97924 1.21873 0.97030 0.88612 0.92093 0.92253 0.93104 0.91198 0.88078 0.90063 0.84622 0.91744 0.88624 0.87278 0.90231 0.89702 0.91410 0.93939 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 13.45 21.45 0.29 -53.25 16 2 C -0.02 -1.04 5.35 84.65 0.45 -0.59 16 3 Si 1.11 49.29 29.90 68.60 2.05 51.34 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.61 -34.09 8.48 25.60 0.22 -33.87 16 8 H 0.04 2.25 7.55 -2.91 -0.02 2.22 16 9 C 0.02 0.96 2.46 -10.35 -0.03 0.94 16 10 H 0.01 0.74 8.00 -2.39 -0.02 0.72 16 11 C -0.12 -4.88 5.77 31.98 0.18 -4.69 16 12 C 0.11 3.45 6.66 86.85 0.58 4.03 16 13 N -0.61 -23.55 3.33 -811.05 -2.70 -26.26 16 14 C 0.52 19.07 7.38 87.66 0.65 19.72 16 15 O -0.60 -26.75 16.23 -3.03 -0.05 -26.80 16 16 C -0.13 -3.27 3.14 -11.01 -0.03 -3.30 16 17 C -0.12 -2.53 7.21 31.12 0.22 -2.30 16 18 C -0.12 -1.91 8.08 31.12 0.25 -1.66 16 19 C -0.12 -2.70 7.41 31.12 0.23 -2.47 16 20 C 0.13 5.83 6.48 86.67 0.56 6.39 16 21 H 0.27 15.02 5.45 -92.71 -0.50 14.52 16 22 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 23 H 0.07 2.98 6.61 -2.39 -0.02 2.96 16 24 H 0.10 2.56 7.22 -2.39 -0.02 2.54 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.14 2.61 8.09 -2.39 -0.02 2.59 16 27 H 0.06 1.59 8.09 -2.38 -0.02 1.57 16 28 H 0.10 1.56 8.05 -2.38 -0.02 1.54 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 1.86 7.43 -2.39 -0.02 1.84 16 33 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.04 1.95 7.64 -2.39 -0.02 1.93 16 Total: -1.00 -67.55 275.53 4.21 -63.35 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.33 Total: 9.45 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.29 Total: -17.82 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.41 Total: -79.51 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.05 Total: 51.34 kcal Total: -67.55 4.21 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259932162.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.226 kcal (2) G-P(sol) polarization free energy of solvation -67.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds