Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48500 * 109.47135 * 239.99878 * 3 2 1 5 5 H 1.48506 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47093 * 119.99702 * 3 2 1 7 7 C 1.37872 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.53940 * 113.74159 * 273.74422 * 10 9 7 12 12 N 1.47811 * 86.03622 * 222.07965 * 11 10 9 13 13 C 1.34780 * 134.45843 * 204.63946 * 12 11 10 14 14 O 1.21274 * 119.99697 * 179.86976 * 13 12 11 15 15 C 1.50698 * 119.99784 * 359.87323 * 13 12 11 16 16 C 1.53781 * 113.61234 * 279.13169 * 15 13 12 17 17 C 1.53956 * 87.01840 * 220.04940 * 16 15 13 18 18 C 1.53778 * 87.11056 * 25.36526 * 17 16 15 19 19 C 1.47581 * 91.04632 * 24.54985 * 12 11 10 20 20 H 0.97006 * 119.99818 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47310 * 60.00072 * 9 7 2 22 22 H 1.08996 * 109.47676 * 299.99796 * 9 7 2 23 23 H 1.09002 * 112.93975 * 45.32977 * 10 9 7 24 24 H 1.09006 * 113.76999 * 336.34491 * 11 10 9 25 25 H 1.09001 * 113.77240 * 107.74418 * 11 10 9 26 26 H 1.08999 * 112.85242 * 50.32727 * 15 13 12 27 27 H 1.09002 * 113.61751 * 334.56835 * 16 15 13 28 28 H 1.09000 * 113.61271 * 105.47356 * 16 15 13 29 29 H 1.08997 * 113.53944 * 270.81304 * 17 16 15 30 30 H 1.09004 * 113.74112 * 139.94391 * 17 16 15 31 31 H 1.08998 * 113.61304 * 220.08775 * 18 17 16 32 32 H 1.09005 * 113.61695 * 89.18680 * 18 17 16 33 33 H 1.09002 * 113.76881 * 221.14304 * 19 12 11 34 34 H 1.09000 * 113.76899 * 89.75658 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 2.7179 -4.0734 -1.4056 12 7 2.5661 -5.4671 -0.9371 13 6 3.1124 -6.6470 -1.2919 14 8 2.7911 -7.6627 -0.7122 15 6 4.1224 -6.7042 -2.4088 16 6 3.4909 -6.7055 -3.8109 17 6 4.5593 -7.7422 -4.2034 18 6 4.6217 -8.1260 -2.7155 19 6 1.5785 -5.0475 0.0761 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5568 0.8902 23 1 3.0577 -3.5265 0.7144 24 1 2.0240 -3.7990 -2.2002 25 1 3.7482 -3.7915 -1.6227 26 1 4.9245 -5.9755 -2.2919 27 1 2.4740 -7.0974 -3.8315 28 1 3.5900 -5.7551 -4.3353 29 1 5.4808 -7.2970 -4.5785 30 1 4.1828 -8.5393 -4.8445 31 1 5.6324 -8.3207 -2.3569 32 1 3.9145 -8.9070 -2.4360 33 1 1.7006 -5.5420 1.0398 34 1 0.5491 -5.0599 -0.2822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = 2.813029 kcal Electronic energy + Delta-G solvation = -15037.901254 eV Core-core repulsion = 12551.076987 eV Total energy + Delta-G solvation = -2486.824268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20970 -38.48271 -36.65157 -33.15396 -30.64622 -27.83841 -25.96519 -25.70817 -25.36624 -23.04008 -20.31484 -19.26679 -18.55998 -16.97633 -16.40273 -15.80500 -15.52332 -15.07784 -14.38104 -13.81540 -13.41379 -12.71246 -12.52958 -12.50387 -12.27586 -12.07531 -11.87256 -11.44547 -11.13381 -10.95901 -10.62131 -10.61385 -10.58022 -10.45027 -10.03730 -9.67575 -9.20627 -9.03240 -8.41950 -8.26328 -6.06696 -4.09827 2.89264 3.21204 3.29275 3.34662 3.36401 4.40080 4.47147 4.55512 4.61751 4.75399 5.01567 5.19317 5.31687 5.48703 5.57717 5.65039 5.70328 5.71974 5.78843 5.86551 5.89249 6.00104 6.04916 6.07310 6.21918 6.38379 6.67468 6.87148 7.56021 7.64387 7.90468 8.11110 8.31814 8.47214 8.95988 9.54889 11.04251 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045223 B = 0.005499 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.011780 B = 5090.174039 C = 5433.645055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.105 4.105 11 C 0.112 3.888 12 N -0.642 5.642 13 C 0.537 3.463 14 O -0.558 6.558 15 C -0.133 4.133 16 C -0.122 4.122 17 C -0.141 4.141 18 C -0.118 4.118 19 C 0.103 3.897 20 H 0.262 0.738 21 H 0.022 0.978 22 H 0.024 0.976 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -10.266 -6.773 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.124 4.124 11 C -0.010 4.010 12 N -0.376 5.376 13 C 0.327 3.673 14 O -0.438 6.438 15 C -0.154 4.154 16 C -0.160 4.160 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.019 4.019 20 H 0.071 0.929 21 H 0.040 0.960 22 H 0.042 0.958 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.119 -10.872 -6.523 14.541 hybrid contribution 0.419 1.105 -0.008 1.182 sum 7.538 -9.767 -6.531 13.959 Atomic orbital electron populations 1.69947 1.06059 1.26855 1.50453 1.25007 0.94820 0.99252 0.95213 0.86663 0.79584 0.83154 0.78625 1.20246 1.21316 1.20242 1.21140 0.92973 0.90779 1.51074 0.92615 1.19084 0.93269 0.90543 0.97860 1.23244 0.99880 0.94227 0.95073 1.23417 1.01500 0.77047 0.99074 1.50375 1.42746 1.06948 1.37511 1.20184 0.82078 0.81603 0.83408 1.90637 1.64124 1.33545 1.55470 1.22708 0.98304 1.00461 0.93931 1.22822 0.99077 1.00189 0.93931 1.22858 0.99232 0.99048 0.96745 1.22796 1.01777 0.95637 0.95347 1.23400 0.93122 0.93893 0.91525 0.92851 0.95965 0.95782 0.89311 0.89534 0.90843 0.87263 0.89871 0.90603 0.89983 0.91137 0.91223 0.88893 0.91041 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.68 9.10 -34.44 -0.31 -14.00 16 8 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.03 0.70 4.81 -27.88 -0.13 0.57 16 10 C -0.11 -1.99 3.76 -89.70 -0.34 -2.32 16 11 C 0.11 1.84 8.18 -2.84 -0.02 1.81 16 12 N -0.64 -10.95 3.61 -178.18 -0.64 -11.59 16 13 C 0.54 9.18 7.58 -10.98 -0.08 9.10 16 14 O -0.56 -11.36 16.64 5.56 0.09 -11.27 16 15 C -0.13 -1.72 3.89 -90.96 -0.35 -2.07 16 16 C -0.12 -1.36 7.64 -25.83 -0.20 -1.56 16 17 C -0.14 -1.33 8.09 -25.83 -0.21 -1.54 16 18 C -0.12 -1.36 7.40 -25.92 -0.19 -1.55 16 19 C 0.10 1.80 8.40 -2.97 -0.02 1.77 16 20 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 21 H 0.02 0.55 7.87 -51.93 -0.41 0.14 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.09 1.69 8.13 -51.93 -0.42 1.27 16 24 H 0.09 1.42 7.92 -51.93 -0.41 1.00 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.22 7.45 -51.93 -0.39 0.83 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -30.14 287.48 -7.86 -38.01 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.39 Total: -1.94 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.97 Total: -8.28 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.09 Total: -36.54 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.14 -7.86 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.819 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds