Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48500 * 109.47135 * 239.99878 * 3 2 1 5 5 H 1.48506 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47093 * 119.99702 * 3 2 1 7 7 C 1.37872 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.53940 * 113.74159 * 273.74422 * 10 9 7 12 12 N 1.47811 * 86.03622 * 222.07965 * 11 10 9 13 13 C 1.34780 * 134.45843 * 204.63946 * 12 11 10 14 14 O 1.21274 * 119.99697 * 179.86976 * 13 12 11 15 15 C 1.50698 * 119.99784 * 359.87323 * 13 12 11 16 16 C 1.53781 * 113.61234 * 279.13169 * 15 13 12 17 17 C 1.53956 * 87.01840 * 220.04940 * 16 15 13 18 18 C 1.53778 * 87.11056 * 25.36526 * 17 16 15 19 19 C 1.47581 * 91.04632 * 24.54985 * 12 11 10 20 20 H 0.97006 * 119.99818 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47310 * 60.00072 * 9 7 2 22 22 H 1.08996 * 109.47676 * 299.99796 * 9 7 2 23 23 H 1.09002 * 112.93975 * 45.32977 * 10 9 7 24 24 H 1.09006 * 113.76999 * 336.34491 * 11 10 9 25 25 H 1.09001 * 113.77240 * 107.74418 * 11 10 9 26 26 H 1.08999 * 112.85242 * 50.32727 * 15 13 12 27 27 H 1.09002 * 113.61751 * 334.56835 * 16 15 13 28 28 H 1.09000 * 113.61271 * 105.47356 * 16 15 13 29 29 H 1.08997 * 113.53944 * 270.81304 * 17 16 15 30 30 H 1.09004 * 113.74112 * 139.94391 * 17 16 15 31 31 H 1.08998 * 113.61304 * 220.08775 * 18 17 16 32 32 H 1.09005 * 113.61695 * 89.18680 * 18 17 16 33 33 H 1.09002 * 113.76881 * 221.14304 * 19 12 11 34 34 H 1.09000 * 113.76899 * 89.75658 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 2.7179 -4.0734 -1.4056 12 7 2.5661 -5.4671 -0.9371 13 6 3.1124 -6.6470 -1.2919 14 8 2.7911 -7.6627 -0.7122 15 6 4.1224 -6.7042 -2.4088 16 6 3.4909 -6.7055 -3.8109 17 6 4.5593 -7.7422 -4.2034 18 6 4.6217 -8.1260 -2.7155 19 6 1.5785 -5.0475 0.0761 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5568 0.8902 23 1 3.0577 -3.5265 0.7144 24 1 2.0240 -3.7990 -2.2002 25 1 3.7482 -3.7915 -1.6227 26 1 4.9245 -5.9755 -2.2919 27 1 2.4740 -7.0974 -3.8315 28 1 3.5900 -5.7551 -4.3353 29 1 5.4808 -7.2970 -4.5785 30 1 4.1828 -8.5393 -4.8445 31 1 5.6324 -8.3207 -2.3569 32 1 3.9145 -8.9070 -2.4360 33 1 1.7006 -5.5420 1.0398 34 1 0.5491 -5.0599 -0.2822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = -14.597301 kcal Electronic energy + Delta-G solvation = -15038.656223 eV Core-core repulsion = 12551.076987 eV Total energy + Delta-G solvation = -2487.579236 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49134 -39.70634 -37.92416 -35.13838 -32.33622 -29.38633 -27.33599 -26.78956 -26.48438 -24.81554 -21.59389 -20.53982 -19.78296 -18.46002 -18.19207 -17.10106 -16.87724 -16.38188 -16.02451 -15.14505 -14.81052 -14.12980 -14.03906 -13.85338 -13.56265 -13.42542 -13.11267 -12.98499 -12.71572 -12.40700 -12.33775 -12.10599 -11.68866 -11.45137 -11.40057 -11.29251 -11.05659 -10.56044 -10.45470 -9.68742 -8.13768 -6.23486 1.46806 1.48135 1.55702 1.57742 1.88763 2.46397 3.20446 3.42277 3.59973 3.68735 3.74317 3.90854 4.05126 4.21074 4.24223 4.47713 4.61655 4.67237 4.72494 4.77531 4.85340 4.87385 4.98107 5.02253 5.09041 5.18067 5.27040 5.51585 5.55646 5.70829 5.87931 6.28428 6.75892 6.92763 7.11982 7.45711 8.97477 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045223 B = 0.005499 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.011780 B = 5090.174039 C = 5433.645055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.102 4.102 11 C 0.124 3.876 12 N -0.642 5.642 13 C 0.531 3.469 14 O -0.598 6.598 15 C -0.135 4.135 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.122 4.122 19 C 0.101 3.899 20 H 0.262 0.738 21 H 0.004 0.996 22 H -0.004 1.004 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -9.946 -8.118 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.084 0.916 9 C -0.001 4.001 10 C -0.121 4.121 11 C 0.002 3.998 12 N -0.375 5.375 13 C 0.323 3.677 14 O -0.480 6.480 15 C -0.156 4.156 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.021 4.021 20 H 0.070 0.930 21 H 0.023 0.977 22 H 0.014 0.986 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.148 0.852 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.329 -10.554 -7.881 16.140 hybrid contribution -0.308 0.967 0.455 1.112 sum 9.021 -9.587 -7.426 15.114 Atomic orbital electron populations 1.70085 1.07763 1.27660 1.51926 1.25887 0.95586 1.03066 0.95011 0.85592 0.78260 0.78584 0.79149 1.18911 1.21540 1.19549 1.21589 0.93646 0.91767 1.50005 0.91648 1.18916 0.93619 0.91950 0.95610 1.23033 0.98958 0.92879 0.97253 1.23355 1.02942 0.76194 0.97276 1.50397 1.42426 1.07453 1.37244 1.21027 0.82249 0.80686 0.83745 1.90616 1.65554 1.34775 1.57044 1.22914 0.97783 1.02003 0.92919 1.22852 0.98845 1.01554 0.92775 1.22830 0.99455 0.98574 0.95266 1.22809 1.01778 0.94160 0.97233 1.23329 0.93429 0.93239 0.92145 0.92962 0.97747 0.98604 0.89142 0.89360 0.88269 0.85246 0.91344 0.89105 0.87717 0.90142 0.89924 0.91137 0.90902 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 41.96 29.54 68.60 2.03 43.99 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.53 -27.71 9.10 25.60 0.23 -27.48 16 8 H 0.07 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 1.75 4.81 29.85 0.14 1.90 16 10 C -0.10 -3.80 3.76 -10.14 -0.04 -3.84 16 11 C 0.12 3.85 8.18 86.44 0.71 4.56 16 12 N -0.64 -21.22 3.61 -836.02 -3.02 -24.24 16 13 C 0.53 17.64 7.58 87.66 0.66 18.30 16 14 O -0.60 -24.41 16.64 -3.01 -0.05 -24.46 16 15 C -0.14 -3.18 3.89 -11.01 -0.04 -3.23 16 16 C -0.12 -2.40 7.64 31.18 0.24 -2.17 16 17 C -0.12 -1.92 8.09 31.18 0.25 -1.67 16 18 C -0.12 -2.56 7.40 31.12 0.23 -2.33 16 19 C 0.10 3.55 8.40 86.48 0.73 4.28 16 20 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 21 H 0.00 0.21 7.87 -2.38 -0.02 0.19 16 22 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H 0.09 3.35 8.13 -2.39 -0.02 3.33 16 24 H 0.09 2.75 7.92 -2.38 -0.02 2.73 16 25 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.81 7.45 -2.38 -0.02 1.79 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 2.83 8.10 -2.39 -0.02 2.82 16 Total: -1.00 -64.84 287.48 3.88 -60.96 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.06 Total: 8.94 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.58 Total: -11.10 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.74 Total: -78.34 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -64.84 3.88 -60.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.364 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds