Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.74041 * 65.74348 * 10 9 7 12 12 C 1.53496 * 113.46657 * 196.56270 * 10 9 7 13 13 C 1.53500 * 83.34250 * 140.84330 * 12 10 9 14 14 N 1.47063 * 113.46446 * 294.99877 * 10 9 7 15 15 C 1.34774 * 136.05982 * 38.13978 * 14 10 9 16 16 O 1.21277 * 119.99921 * 359.97438 * 15 14 10 17 17 C 1.50704 * 120.00264 * 179.97438 * 15 14 10 18 18 C 1.53776 * 113.61665 * 279.13927 * 17 15 14 19 19 C 1.53954 * 87.01890 * 220.04606 * 18 17 15 20 20 C 1.53778 * 87.11303 * 25.36285 * 19 18 17 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.08992 * 114.20954 * 254.43685 * 12 10 9 25 25 H 1.09005 * 114.20017 * 27.26602 * 12 10 9 26 26 H 1.08994 * 113.47050 * 219.14896 * 13 12 10 27 27 H 1.09000 * 113.46218 * 88.71490 * 13 12 10 28 28 H 1.09009 * 112.84483 * 50.33334 * 17 15 14 29 29 H 1.09005 * 113.61384 * 334.56552 * 18 17 15 30 30 H 1.08998 * 113.61626 * 105.46707 * 18 17 15 31 31 H 1.09005 * 113.53509 * 270.81016 * 19 18 17 32 32 H 1.08998 * 113.74443 * 139.94783 * 19 18 17 33 33 H 1.08998 * 113.61174 * 220.09326 * 20 19 18 34 34 H 1.08995 * 113.69199 * 89.19585 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.8331 -3.7139 0.9160 12 6 1.6169 -5.0037 -0.4019 13 6 2.9461 -5.2008 -1.1440 14 7 3.0592 -3.7367 -1.2232 15 6 3.6497 -2.8524 -2.0514 16 8 3.5549 -1.6628 -1.8356 17 6 4.4279 -3.3420 -3.2455 18 6 5.8551 -3.8016 -2.9045 19 6 6.2999 -3.1235 -4.2132 20 6 5.0699 -2.2121 -4.0678 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 1.4627 -5.6916 0.4294 25 1 0.7494 -4.9130 -1.0557 26 1 2.8335 -5.6808 -2.1160 27 1 3.7203 -5.6636 -0.5320 28 1 3.8707 -4.0588 -3.8488 29 1 6.2628 -3.3323 -2.0091 30 1 5.9779 -4.8846 -2.9093 31 1 6.2558 -3.7813 -5.0812 32 1 7.2486 -2.5928 -4.1321 33 1 4.5596 -2.0138 -5.0104 34 1 5.2610 -1.3070 -3.4914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259969556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = 20.887591 kcal Electronic energy + Delta-G solvation = -15851.697690 eV Core-core repulsion = 13365.657194 eV Total energy + Delta-G solvation = -2486.040496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02217 -38.43761 -36.10329 -33.06023 -29.76686 -28.48877 -26.07636 -25.45806 -24.07304 -21.77360 -21.59065 -19.37580 -18.16902 -16.83610 -16.42546 -15.41754 -15.30977 -14.69787 -13.53887 -13.49950 -13.31491 -12.65539 -12.41203 -12.31559 -12.18751 -11.87416 -11.62732 -11.13826 -11.03774 -10.82551 -10.58230 -10.38427 -10.29520 -10.23564 -9.89288 -9.50581 -8.55872 -8.12807 -7.99136 -7.86221 -6.01321 -3.62715 3.47516 3.55062 3.61301 3.70349 3.88565 4.69170 4.77540 4.80925 4.83972 4.89284 4.97409 5.23959 5.41330 5.57089 5.66896 5.72010 5.73013 5.82421 5.89673 5.91376 5.95751 6.05410 6.11412 6.26987 6.42916 6.53729 6.61251 6.76048 7.40424 7.59867 8.46283 8.62486 8.86292 9.15721 9.28138 9.99985 11.37917 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.011037 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.266657 B = 2536.286302 C = 3503.950414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 1.069 2.931 4 H -0.295 1.295 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.553 4.553 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.148 3.852 11 H 0.075 0.925 12 C -0.160 4.160 13 C 0.100 3.900 14 N -0.636 5.636 15 C 0.529 3.471 16 O -0.477 6.477 17 C -0.132 4.132 18 C -0.122 4.122 19 C -0.142 4.142 20 C -0.118 4.118 21 H 0.261 0.739 22 H 0.015 0.985 23 H 0.009 0.991 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 -12.338 -5.757 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.900 3.100 4 H -0.223 1.223 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.592 4.592 8 H 0.085 0.915 9 C -0.034 4.034 10 C 0.045 3.955 11 H 0.092 0.908 12 C -0.198 4.198 13 C -0.024 4.024 14 N -0.375 5.375 15 C 0.316 3.684 16 O -0.348 6.348 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.179 4.179 20 C -0.156 4.156 21 H 0.071 0.929 22 H 0.033 0.967 23 H 0.027 0.973 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.644 -9.828 -5.811 14.945 hybrid contribution 0.127 -1.895 -0.058 1.901 sum 9.771 -11.723 -5.868 16.351 Atomic orbital electron populations 1.70787 1.06949 1.29823 1.49758 1.25632 0.96398 1.02525 0.94757 0.83539 0.75225 0.75295 0.75974 1.22259 1.21661 1.21219 1.22176 0.95232 0.90654 1.51140 0.91471 1.19450 0.93961 0.93831 0.96208 1.22638 0.90996 0.94804 0.87026 0.90759 1.23551 0.96913 0.98726 1.00656 1.22793 0.96594 0.83224 0.99784 1.49678 1.53793 1.06083 1.27900 1.19854 0.79003 0.86143 0.83381 1.90953 1.57137 1.14781 1.71938 1.22733 0.95734 1.00264 0.96587 1.22797 0.94411 1.00245 0.98493 1.22856 0.98530 0.99045 0.97514 1.22793 0.95502 0.97543 0.99722 0.92867 0.96655 0.97325 0.90398 0.89331 0.91636 0.90911 0.88191 0.89909 0.91375 0.90331 0.91303 0.91379 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.72 13.65 55.43 0.76 -29.96 16 2 C 0.01 0.23 5.46 -17.82 -0.10 0.13 16 3 Si 1.07 28.74 29.90 -169.99 -5.08 23.65 16 4 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 7 C -0.55 -16.81 6.70 -34.44 -0.23 -17.04 16 8 H 0.07 2.11 5.80 -52.48 -0.30 1.81 16 9 C 0.00 0.07 4.28 -27.88 -0.12 -0.05 16 10 C 0.15 3.06 4.03 -72.40 -0.29 2.77 16 11 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 12 C -0.16 -2.45 8.02 -26.22 -0.21 -2.66 16 13 C 0.10 1.39 8.41 -8.51 -0.07 1.32 16 14 N -0.64 -12.41 3.57 -177.45 -0.63 -13.04 16 15 C 0.53 11.13 7.51 -10.98 -0.08 11.05 16 16 O -0.48 -12.62 12.07 5.56 0.07 -12.55 16 17 C -0.13 -2.04 3.97 -90.96 -0.36 -2.40 16 18 C -0.12 -1.54 7.64 -25.83 -0.20 -1.74 16 19 C -0.14 -1.62 8.09 -25.83 -0.21 -1.83 16 20 C -0.12 -1.74 7.40 -25.92 -0.19 -1.93 16 21 H 0.26 8.50 7.22 -40.82 -0.29 8.21 16 22 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 23 H 0.01 0.25 7.95 -51.93 -0.41 -0.17 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.37 8.14 -51.92 -0.42 0.94 16 29 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.65 7.45 -51.93 -0.39 1.27 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -36.08 277.90 -8.02 -44.10 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.25 Total: -4.01 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.06 Total: -12.38 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.12 Total: -43.00 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 28.74 SS G_CDS: -5.08 Total: 23.65 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -36.08 -8.02 -44.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.986 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds