Wall clock time and date at job start Mon Mar 30 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.74041 * 65.74348 * 10 9 7 12 12 C 1.53496 * 113.46657 * 196.56270 * 10 9 7 13 13 C 1.53500 * 83.34250 * 140.84330 * 12 10 9 14 14 N 1.47063 * 113.46446 * 294.99877 * 10 9 7 15 15 C 1.34774 * 136.05982 * 38.13978 * 14 10 9 16 16 O 1.21277 * 119.99921 * 359.97438 * 15 14 10 17 17 C 1.50704 * 120.00264 * 179.97438 * 15 14 10 18 18 C 1.53776 * 113.61665 * 279.13927 * 17 15 14 19 19 C 1.53954 * 87.01890 * 220.04606 * 18 17 15 20 20 C 1.53778 * 87.11303 * 25.36285 * 19 18 17 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.08992 * 114.20954 * 254.43685 * 12 10 9 25 25 H 1.09005 * 114.20017 * 27.26602 * 12 10 9 26 26 H 1.08994 * 113.47050 * 219.14896 * 13 12 10 27 27 H 1.09000 * 113.46218 * 88.71490 * 13 12 10 28 28 H 1.09009 * 112.84483 * 50.33334 * 17 15 14 29 29 H 1.09005 * 113.61384 * 334.56552 * 18 17 15 30 30 H 1.08998 * 113.61626 * 105.46707 * 18 17 15 31 31 H 1.09005 * 113.53509 * 270.81016 * 19 18 17 32 32 H 1.08998 * 113.74443 * 139.94783 * 19 18 17 33 33 H 1.08998 * 113.61174 * 220.09326 * 20 19 18 34 34 H 1.08995 * 113.69199 * 89.19585 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.8331 -3.7139 0.9160 12 6 1.6169 -5.0037 -0.4019 13 6 2.9461 -5.2008 -1.1440 14 7 3.0592 -3.7367 -1.2232 15 6 3.6497 -2.8524 -2.0514 16 8 3.5549 -1.6628 -1.8356 17 6 4.4279 -3.3420 -3.2455 18 6 5.8551 -3.8016 -2.9045 19 6 6.2999 -3.1235 -4.2132 20 6 5.0699 -2.2121 -4.0678 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 1.4627 -5.6916 0.4294 25 1 0.7494 -4.9130 -1.0557 26 1 2.8335 -5.6808 -2.1160 27 1 3.7203 -5.6636 -0.5320 28 1 3.8707 -4.0588 -3.8488 29 1 6.2628 -3.3323 -2.0091 30 1 5.9779 -4.8846 -2.9093 31 1 6.2558 -3.7813 -5.0812 32 1 7.2486 -2.5928 -4.1321 33 1 4.5596 -2.0138 -5.0104 34 1 5.2610 -1.3070 -3.4914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259969556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:56 Heat of formation + Delta-G solvation = -3.796585 kcal Electronic energy + Delta-G solvation = -15852.768076 eV Core-core repulsion = 13365.657194 eV Total energy + Delta-G solvation = -2487.110882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.46013 -39.70475 -37.63421 -35.38342 -31.50869 -30.26398 -27.26188 -26.53376 -26.08266 -23.54088 -23.01089 -20.55174 -19.60364 -18.88670 -18.06475 -16.98484 -16.48186 -16.17092 -15.64536 -15.04096 -14.82558 -14.55723 -13.83712 -13.70754 -13.46625 -13.38039 -13.17348 -12.82717 -12.59374 -12.40433 -12.24112 -12.05312 -12.03838 -11.42271 -11.31016 -11.24614 -10.52543 -10.45182 -10.05619 -9.42621 -8.51470 -6.11555 1.40401 1.53405 1.73948 1.94813 2.13577 2.58994 3.27425 3.55115 3.57586 3.68073 3.74608 3.91623 4.06685 4.22878 4.39374 4.50220 4.59146 4.64626 4.75254 4.78361 4.85146 4.88002 4.95356 5.00533 5.07473 5.16419 5.20673 5.32733 5.50895 5.60437 6.12678 6.40002 6.76164 7.14817 7.56287 7.60235 8.87677 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.011037 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.266657 B = 2536.286302 C = 3503.950414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.053 4.053 3 Si 1.111 2.889 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.005 3.995 10 C 0.129 3.871 11 H 0.078 0.922 12 C -0.140 4.140 13 C 0.112 3.888 14 N -0.648 5.648 15 C 0.512 3.488 16 O -0.552 6.552 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.133 4.133 21 H 0.249 0.751 22 H 0.002 0.998 23 H -0.021 1.021 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 -15.148 -6.580 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.247 4.247 3 Si 0.936 3.064 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.587 4.587 8 H 0.071 0.929 9 C -0.032 4.032 10 C 0.026 3.974 11 H 0.096 0.904 12 C -0.178 4.178 13 C -0.009 4.009 14 N -0.384 5.384 15 C 0.302 3.698 16 O -0.429 6.429 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.171 4.171 21 H 0.058 0.942 22 H 0.020 0.980 23 H -0.003 1.003 24 H 0.134 0.866 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.419 -12.714 -6.620 18.327 hybrid contribution -0.444 -1.074 0.210 1.181 sum 10.976 -13.788 -6.410 18.753 Atomic orbital electron populations 1.70907 1.07676 1.29061 1.52456 1.26971 0.96656 1.06304 0.94733 0.82981 0.73912 0.72197 0.77310 1.19538 1.21163 1.21534 1.22466 0.94791 0.92411 1.48990 0.92855 1.19341 0.94648 0.95270 0.93930 1.22712 0.90943 0.95330 0.88459 0.90369 1.23464 0.97346 0.95300 1.01698 1.23068 0.96207 0.79724 1.01918 1.49967 1.52573 1.09040 1.26843 1.20999 0.78500 0.85590 0.84672 1.90890 1.60034 1.17921 1.74063 1.22865 0.96619 1.01057 0.94422 1.22770 0.91634 1.02228 0.98311 1.22819 0.96993 0.97977 0.97927 1.22828 0.98087 0.96831 0.99351 0.94166 0.98031 1.00295 0.86625 0.90291 0.88405 0.87559 0.85466 0.91965 0.87926 0.87223 0.90473 0.90791 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -65.47 13.65 21.45 0.29 -65.18 16 2 C -0.05 -3.45 5.46 84.65 0.46 -2.99 16 3 Si 1.11 59.86 29.90 68.60 2.05 61.91 16 4 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 6 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 7 C -0.55 -34.68 6.70 25.60 0.17 -34.50 16 8 H 0.05 3.51 5.80 -2.91 -0.02 3.49 16 9 C 0.01 0.30 4.28 29.85 0.13 0.43 16 10 C 0.13 5.28 4.03 41.79 0.17 5.45 16 11 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 12 C -0.14 -3.87 8.02 30.93 0.25 -3.62 16 13 C 0.11 2.62 8.41 83.18 0.70 3.32 16 14 N -0.65 -24.45 3.57 -833.72 -2.97 -27.43 16 15 C 0.51 21.66 7.51 87.66 0.66 22.31 16 16 O -0.55 -30.63 12.07 -3.02 -0.04 -30.67 16 17 C -0.13 -3.72 3.97 -11.01 -0.04 -3.76 16 18 C -0.11 -2.45 7.64 31.18 0.24 -2.22 16 19 C -0.12 -2.33 8.09 31.18 0.25 -2.08 16 20 C -0.13 -3.84 7.40 31.12 0.23 -3.61 16 21 H 0.25 17.02 7.22 -92.71 -0.67 16.35 16 22 H 0.00 0.09 8.01 -2.39 -0.02 0.07 16 23 H -0.02 -1.29 7.95 -2.39 -0.02 -1.30 16 24 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.08 2.35 8.08 -2.38 -0.02 2.33 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.13 2.98 8.14 -2.38 -0.02 2.96 16 29 H 0.06 1.63 8.09 -2.38 -0.02 1.61 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.12 7.45 -2.39 -0.02 2.11 16 Total: -1.00 -85.06 277.90 3.71 -81.35 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 1.17 Total: 1.27 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 3.21 Total: -21.26 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -2.68 Total: -92.60 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.04 Total: -30.67 kcal Atomic # 14 Polarization: 59.86 SS G_CDS: 2.05 Total: 61.91 kcal Total: -85.06 3.71 -81.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259969556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.552 kcal (2) G-P(sol) polarization free energy of solvation -85.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds