Wall clock time and date at job start Mon Mar 30 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00124 * 2 1 4 4 H 1.48496 * 109.47225 * 269.99929 * 3 2 1 5 5 H 1.48493 * 109.47204 * 30.00233 * 3 2 1 6 6 H 1.48505 * 109.46894 * 150.00346 * 3 2 1 7 7 C 1.37876 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47155 * 185.19881 * 10 9 7 12 12 H 1.09000 * 113.03639 * 41.71522 * 11 10 9 13 13 C 1.53943 * 113.76765 * 173.46515 * 11 10 9 14 14 C 1.53951 * 86.40554 * 137.96284 * 13 11 10 15 15 N 1.47584 * 86.11641 * 336.33947 * 14 13 11 16 16 C 1.34779 * 134.49212 * 204.65768 * 15 14 13 17 17 O 1.21275 * 119.99881 * 174.93950 * 16 15 14 18 18 C 1.50697 * 119.99749 * 354.94291 * 16 15 14 19 19 C 1.53005 * 117.50101 * 248.74421 * 18 16 15 20 20 C 1.52999 * 117.49687 * 180.08301 * 18 16 15 21 21 H 0.97004 * 119.99831 * 0.02562 * 1 2 3 22 22 H 1.08988 * 109.47414 * 59.99741 * 9 7 2 23 23 H 1.09003 * 109.46867 * 299.99607 * 9 7 2 24 24 H 1.09003 * 109.47240 * 65.20107 * 10 9 7 25 25 H 1.08993 * 109.47407 * 305.19904 * 10 9 7 26 26 H 1.08995 * 113.74483 * 23.56932 * 13 11 10 27 27 H 1.08996 * 113.74080 * 252.35659 * 13 11 10 28 28 H 1.09006 * 113.76564 * 90.63751 * 14 13 11 29 29 H 1.08997 * 113.77221 * 221.92366 * 14 13 11 30 30 H 1.09005 * 115.55362 * 34.41903 * 18 16 15 31 31 H 1.09001 * 117.49022 * 0.02562 * 19 18 16 32 32 H 1.08996 * 117.49791 * 145.02218 * 19 18 16 33 33 H 1.09003 * 117.50013 * 214.97966 * 20 18 16 34 34 H 1.09005 * 117.50036 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4846 -4.9833 -0.1333 12 1 0.6715 -4.9369 -0.8577 13 6 2.3981 -6.2106 -0.3036 14 6 1.4530 -6.9289 0.6766 15 7 1.0956 -5.5819 1.1622 16 6 0.6102 -5.0935 2.3209 17 8 0.4933 -3.8959 2.4724 18 6 0.2130 -6.0355 3.4280 19 6 -1.2766 -6.1491 3.7584 20 6 -0.3329 -5.4195 4.7177 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8918 23 1 0.6239 -2.5575 0.8881 24 1 2.8081 -3.6586 0.9319 25 1 2.9321 -3.5530 -0.8406 26 1 3.4058 -6.0651 0.0855 27 1 2.3875 -6.6294 -1.3098 28 1 0.6305 -7.4529 0.1896 29 1 1.9694 -7.5416 1.4156 30 1 0.8187 -6.9373 3.5180 31 1 -1.9692 -5.5428 3.1747 32 1 -1.6508 -7.1255 4.0662 33 1 -0.0867 -5.9163 5.6562 34 1 -0.4042 -4.3329 4.7657 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:33 Heat of formation + Delta-G solvation = 14.818185 kcal Electronic energy + Delta-G solvation = -15350.083240 eV Core-core repulsion = 12863.779555 eV Total energy + Delta-G solvation = -2486.303685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.01895 -37.93498 -35.55616 -33.42012 -31.09448 -29.39915 -26.39442 -24.20537 -23.30310 -22.35364 -20.93571 -20.27631 -18.35823 -17.07405 -15.99883 -15.70607 -15.24364 -14.62809 -14.31086 -13.82991 -13.39767 -12.58261 -12.45305 -12.20961 -12.06262 -11.92133 -11.46533 -11.28101 -11.00875 -10.80866 -10.59532 -10.52660 -10.35530 -10.31255 -9.58155 -9.21949 -9.01771 -8.73145 -8.22284 -8.10379 -5.79812 -3.80072 2.95011 3.13942 3.42150 3.47671 3.51904 4.03326 4.58604 4.60923 4.66987 4.89068 4.98826 5.12768 5.25718 5.32453 5.52701 5.55612 5.60826 5.66815 5.76019 5.86252 5.99677 6.07385 6.14366 6.26465 6.33597 6.80223 6.97684 7.31419 7.88839 8.12483 8.19630 8.29398 8.64354 8.81420 9.29808 9.80912 11.31782 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.007579 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.087255 B = 3693.353044 C = 4407.747224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.050 0.950 9 C 0.012 3.988 10 C -0.109 4.109 11 C 0.141 3.859 12 H 0.088 0.912 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.640 5.640 16 C 0.549 3.451 17 O -0.501 6.501 18 C -0.186 4.186 19 C -0.156 4.156 20 C -0.151 4.151 21 H 0.257 0.743 22 H 0.005 0.995 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 -17.329 3.688 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.068 0.932 9 C -0.025 4.025 10 C -0.147 4.147 11 C 0.039 3.961 12 H 0.106 0.894 13 C -0.192 4.192 14 C -0.022 4.022 15 N -0.378 5.378 16 C 0.337 3.663 17 O -0.375 6.375 18 C -0.207 4.207 19 C -0.193 4.193 20 C -0.188 4.188 21 H 0.067 0.933 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.710 -16.454 3.977 16.943 hybrid contribution 0.432 0.766 -0.047 0.881 sum 1.142 -15.688 3.930 16.213 Atomic orbital electron populations 1.69990 1.05961 1.26069 1.51438 1.24993 0.94788 0.98948 0.95775 0.86663 0.79892 0.83985 0.77839 1.20853 1.21338 1.20048 1.21252 0.92695 0.91416 1.49728 0.93194 1.19294 0.94249 0.90586 0.98397 1.21756 0.99079 0.93427 1.00436 1.23120 0.95113 0.95203 0.82656 0.89435 1.23649 0.99122 0.96888 0.99558 1.23055 0.96772 0.86740 0.95648 1.50214 1.65521 1.09594 1.12485 1.19297 0.76812 0.88401 0.81755 1.90850 1.52043 1.15020 1.79562 1.22153 0.98945 1.01791 0.97792 1.22909 0.90824 1.02382 1.03191 1.22959 1.01780 1.01798 0.92267 0.93341 0.97676 0.93147 0.92866 0.92346 0.89200 0.90201 0.90312 0.90758 0.86752 0.88247 0.88258 0.88319 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -29.01 13.29 55.43 0.74 -28.27 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 23.14 29.54 -169.99 -5.02 18.12 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.51 -15.77 9.11 -34.44 -0.31 -16.08 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.01 0.33 4.86 -27.88 -0.14 0.19 16 10 C -0.11 -2.42 4.64 -26.73 -0.12 -2.55 16 11 C 0.14 2.47 4.21 -66.66 -0.28 2.19 16 12 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 13 C -0.15 -1.87 7.85 -25.80 -0.20 -2.08 16 14 C 0.10 1.14 8.62 -2.96 -0.03 1.11 16 15 N -0.64 -10.73 3.50 -170.89 -0.60 -11.33 16 16 C 0.55 10.40 7.76 -10.99 -0.09 10.31 16 17 O -0.50 -12.33 13.89 5.56 0.08 -12.26 16 18 C -0.19 -2.57 5.94 -91.77 -0.55 -3.11 16 19 C -0.16 -1.88 10.24 -26.69 -0.27 -2.15 16 20 C -0.15 -1.96 10.05 -26.69 -0.27 -2.23 16 21 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 22 H 0.00 0.15 8.13 -51.94 -0.42 -0.28 16 23 H 0.05 1.59 5.49 -51.93 -0.29 1.31 16 24 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 1.72 7.67 -51.93 -0.40 1.32 16 LS Contribution 287.08 15.07 4.33 4.33 Total: -1.00 -36.34 287.08 -8.12 -44.46 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.29 Total: -2.27 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.35 Total: -12.78 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.14 Total: -39.60 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.34 -8.12 -44.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.276 kcal (2) G-P(sol) polarization free energy of solvation -36.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds