Wall clock time and date at job start Mon Mar 30 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00124 * 2 1 4 4 H 1.48496 * 109.47225 * 269.99929 * 3 2 1 5 5 H 1.48493 * 109.47204 * 30.00233 * 3 2 1 6 6 H 1.48505 * 109.46894 * 150.00346 * 3 2 1 7 7 C 1.37876 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99804 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47155 * 185.19881 * 10 9 7 12 12 H 1.09000 * 113.03639 * 41.71522 * 11 10 9 13 13 C 1.53943 * 113.76765 * 173.46515 * 11 10 9 14 14 C 1.53951 * 86.40554 * 137.96284 * 13 11 10 15 15 N 1.47584 * 86.11641 * 336.33947 * 14 13 11 16 16 C 1.34779 * 134.49212 * 204.65768 * 15 14 13 17 17 O 1.21275 * 119.99881 * 174.93950 * 16 15 14 18 18 C 1.50697 * 119.99749 * 354.94291 * 16 15 14 19 19 C 1.53005 * 117.50101 * 248.74421 * 18 16 15 20 20 C 1.52999 * 117.49687 * 180.08301 * 18 16 15 21 21 H 0.97004 * 119.99831 * 0.02562 * 1 2 3 22 22 H 1.08988 * 109.47414 * 59.99741 * 9 7 2 23 23 H 1.09003 * 109.46867 * 299.99607 * 9 7 2 24 24 H 1.09003 * 109.47240 * 65.20107 * 10 9 7 25 25 H 1.08993 * 109.47407 * 305.19904 * 10 9 7 26 26 H 1.08995 * 113.74483 * 23.56932 * 13 11 10 27 27 H 1.08996 * 113.74080 * 252.35659 * 13 11 10 28 28 H 1.09006 * 113.76564 * 90.63751 * 14 13 11 29 29 H 1.08997 * 113.77221 * 221.92366 * 14 13 11 30 30 H 1.09005 * 115.55362 * 34.41903 * 18 16 15 31 31 H 1.09001 * 117.49022 * 0.02562 * 19 18 16 32 32 H 1.08996 * 117.49791 * 145.02218 * 19 18 16 33 33 H 1.09003 * 117.50013 * 214.97966 * 20 18 16 34 34 H 1.09005 * 117.50036 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4846 -4.9833 -0.1333 12 1 0.6715 -4.9369 -0.8577 13 6 2.3981 -6.2106 -0.3036 14 6 1.4530 -6.9289 0.6766 15 7 1.0956 -5.5819 1.1622 16 6 0.6102 -5.0935 2.3209 17 8 0.4933 -3.8959 2.4724 18 6 0.2130 -6.0355 3.4280 19 6 -1.2766 -6.1491 3.7584 20 6 -0.3329 -5.4195 4.7177 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8918 23 1 0.6239 -2.5575 0.8881 24 1 2.8081 -3.6586 0.9319 25 1 2.9321 -3.5530 -0.8406 26 1 3.4058 -6.0651 0.0855 27 1 2.3875 -6.6294 -1.3098 28 1 0.6305 -7.4529 0.1896 29 1 1.9694 -7.5416 1.4156 30 1 0.8187 -6.9373 3.5180 31 1 -1.9692 -5.5428 3.1747 32 1 -1.6508 -7.1255 4.0662 33 1 -0.0867 -5.9163 5.6562 34 1 -0.4042 -4.3329 4.7657 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039486.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:33 Heat of formation + Delta-G solvation = -10.209530 kcal Electronic energy + Delta-G solvation = -15351.168523 eV Core-core repulsion = 12863.779555 eV Total energy + Delta-G solvation = -2487.388968 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32183 -39.19654 -36.82843 -35.63725 -33.15754 -30.73864 -28.27732 -25.52555 -24.95280 -23.33941 -22.37601 -21.93494 -19.64927 -18.67365 -17.96674 -17.09389 -16.60824 -16.36242 -15.82452 -15.27470 -14.75385 -14.46468 -14.09671 -13.77325 -13.56175 -13.19976 -12.91388 -12.83841 -12.54528 -12.46135 -12.28110 -12.11095 -11.74616 -11.52201 -11.43511 -11.25823 -10.86293 -10.62459 -10.39170 -9.56373 -8.19060 -6.30087 1.32351 1.36888 1.47393 1.61809 1.93325 2.38627 2.94764 3.12711 3.48720 3.61304 3.85337 3.97956 4.09672 4.21330 4.24977 4.40784 4.47354 4.57557 4.69833 4.71803 4.87526 4.95353 5.01340 5.05573 5.18140 5.22379 5.28004 5.40052 5.51762 5.81894 5.98214 6.26053 6.87081 6.92968 7.36869 7.38986 8.93302 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.007579 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.087255 B = 3693.353044 C = 4407.747224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.017 3.983 10 C -0.094 4.094 11 C 0.119 3.881 12 H 0.081 0.919 13 C -0.130 4.130 14 C 0.110 3.890 15 N -0.648 5.648 16 C 0.530 3.470 17 O -0.580 6.580 18 C -0.186 4.186 19 C -0.138 4.138 20 C -0.158 4.158 21 H 0.261 0.739 22 H -0.022 1.022 23 H 0.012 0.988 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.155 0.845 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -19.914 3.697 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.020 4.020 10 C -0.132 4.132 11 C 0.017 3.983 12 H 0.098 0.902 13 C -0.168 4.168 14 C -0.010 4.010 15 N -0.384 5.384 16 C 0.321 3.679 17 O -0.460 6.460 18 C -0.207 4.207 19 C -0.175 4.175 20 C -0.196 4.196 21 H 0.069 0.931 22 H -0.004 1.004 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.173 0.827 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.094 -19.111 3.956 19.628 hybrid contribution -0.033 1.566 -0.080 1.568 sum 2.060 -17.546 3.876 18.086 Atomic orbital electron populations 1.70157 1.08013 1.27429 1.52083 1.26079 0.95839 1.03637 0.94889 0.85401 0.78429 0.78116 0.78797 1.18907 1.20729 1.18983 1.21733 0.93181 0.92919 1.50123 0.92722 1.19135 0.94773 0.92978 0.95114 1.21489 0.97916 0.94008 0.99788 1.23164 0.96329 0.95081 0.83762 0.90158 1.23562 0.98235 0.92970 1.02006 1.23417 0.97323 0.84535 0.95764 1.50513 1.64041 1.12339 1.11477 1.20351 0.75811 0.88329 0.83391 1.90814 1.55360 1.18546 1.81293 1.22194 1.00670 1.01860 0.95949 1.23007 0.89282 1.03692 1.01529 1.23005 1.02715 0.99981 0.93860 0.93052 1.00412 0.97005 0.94741 0.91197 0.88829 0.86768 0.87620 0.87365 0.82706 0.90935 0.83811 0.84600 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.35 13.29 21.45 0.28 -63.07 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 3 Si 0.97 48.59 29.54 68.60 2.03 50.62 16 4 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -34.77 9.11 25.60 0.23 -34.54 16 8 H 0.05 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.03 4.86 29.85 0.15 1.18 16 10 C -0.09 -4.35 4.64 30.60 0.14 -4.21 16 11 C 0.12 4.19 4.21 45.03 0.19 4.38 16 12 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 13 C -0.13 -2.72 7.85 31.25 0.25 -2.47 16 14 C 0.11 2.01 8.62 86.49 0.75 2.76 16 15 N -0.65 -21.30 3.50 -812.96 -2.84 -24.14 16 16 C 0.53 20.67 7.76 87.66 0.68 21.35 16 17 O -0.58 -31.00 13.89 -3.01 -0.04 -31.04 16 18 C -0.19 -4.86 5.94 -11.54 -0.07 -4.93 16 19 C -0.14 -3.10 10.24 30.62 0.31 -2.79 16 20 C -0.16 -4.04 10.05 30.62 0.31 -3.73 16 21 H 0.26 16.46 8.31 -92.71 -0.77 15.69 16 22 H -0.02 -1.45 8.13 -2.39 -0.02 -1.47 16 23 H 0.01 0.80 5.49 -2.39 -0.01 0.79 16 24 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.16 2.75 8.14 -2.38 -0.02 2.73 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.34 7.67 -2.38 -0.02 2.32 16 Total: -1.00 -87.81 287.08 3.89 -83.93 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.06 Total: 6.73 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.40 Total: -23.03 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.56 Total: -87.21 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.04 Total: -31.04 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -87.81 3.89 -83.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039486.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.717 kcal (2) G-P(sol) polarization free energy of solvation -87.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds