Wall clock time and date at job start Mon Mar 30 2020 02:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00222 * 2 1 4 4 C 1.39845 * 110.99856 * 123.95253 * 2 1 3 5 5 C 1.39125 * 120.08134 * 300.00174 * 4 2 1 6 6 F 1.35095 * 120.05163 * 359.74456 * 5 4 2 7 7 C 1.38235 * 119.88726 * 179.72649 * 5 4 2 8 8 C 1.38321 * 120.05329 * 359.97438 * 7 5 4 9 9 C 1.38232 * 120.16220 * 0.02562 * 8 7 5 10 10 C 1.38196 * 120.11191 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.02954 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46853 * 265.01923 * 11 10 9 13 13 H 1.08007 * 120.00235 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99441 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00201 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47254 * 89.99979 * 16 14 12 18 18 H 1.48501 * 109.47220 * 209.99810 * 16 14 12 19 19 H 1.48498 * 109.47189 * 330.00134 * 16 14 12 20 20 H 1.08998 * 109.46964 * 296.04604 * 1 2 3 21 21 H 1.08996 * 109.47001 * 56.04925 * 1 2 3 22 22 H 1.08999 * 109.46965 * 176.04684 * 1 2 3 23 23 H 1.08992 * 109.47221 * 183.95024 * 3 2 1 24 24 H 1.09003 * 109.47058 * 303.95519 * 3 2 1 25 25 H 1.09005 * 109.47075 * 63.94934 * 3 2 1 26 26 H 1.08004 * 119.97343 * 179.97438 * 7 5 4 27 27 H 1.08006 * 119.92311 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.94919 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.46792 * 25.01779 * 11 10 9 30 30 H 1.08995 * 109.47269 * 145.01974 * 11 10 9 31 31 H 0.97008 * 119.99406 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9702 -0.7292 1.0830 5 6 1.6581 -0.3484 2.3842 6 9 0.8743 0.7297 2.6041 7 6 2.1510 -1.0755 3.4516 8 6 2.9527 -2.1799 3.2263 9 6 3.2641 -2.5601 1.9343 10 6 2.7750 -1.8381 0.8622 11 6 3.1162 -2.2539 -0.5456 12 6 4.3111 -1.4708 -1.0250 13 1 4.7766 -0.7442 -0.3754 14 6 4.8101 -1.6816 -2.2929 15 7 4.2435 -2.5667 -3.0837 16 14 6.2907 -0.7103 -2.8874 17 1 7.5349 -1.4452 -2.5447 18 1 6.2090 -0.5350 -4.3598 19 1 6.3055 0.6213 -2.2304 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3431 -0.0708 24 1 1.5899 1.9163 -0.8524 25 1 1.7044 1.8723 0.9233 26 1 1.9099 -0.7809 4.4624 27 1 3.3363 -2.7467 4.0618 28 1 3.8900 -3.4232 1.7623 29 1 3.3486 -3.3187 -0.5637 30 1 2.2664 -2.0563 -1.1989 31 1 4.5943 -2.7148 -3.9758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260111934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:49 Heat of formation + Delta-G solvation = -14.833363 kcal Electronic energy + Delta-G solvation = -15419.300645 eV Core-core repulsion = 12808.250868 eV Total energy + Delta-G solvation = -2611.049778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.63901 -39.08180 -36.04591 -33.32158 -31.10424 -29.27534 -27.14919 -27.03690 -23.94349 -23.25036 -21.04820 -20.36357 -16.75231 -16.32077 -16.15171 -15.91796 -15.32621 -14.46815 -14.37930 -14.16201 -13.37095 -13.19192 -12.65149 -12.32022 -11.94957 -11.78739 -11.55442 -11.25742 -11.21960 -11.10354 -10.90735 -10.57448 -10.37692 -9.61260 -9.40145 -8.33329 -8.13781 -7.92850 -7.83294 -5.95724 -3.96452 1.63905 1.84515 3.34094 3.40562 3.44083 4.14000 4.38745 4.51972 4.66540 5.19998 5.38950 5.46077 5.64833 5.72109 5.76037 5.90997 5.95146 6.00780 6.19459 6.29237 6.44961 6.57253 6.65724 6.84910 7.01058 7.32124 7.42235 7.66267 7.84527 8.00579 8.01265 8.41079 9.05521 9.64467 11.14970 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.009656 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.423357 B = 2899.084886 C = 3285.326500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.482 5.482 3 C 0.031 3.969 4 C 0.053 3.947 5 C 0.058 3.942 6 F -0.148 7.148 7 C -0.179 4.179 8 C -0.098 4.098 9 C -0.132 4.132 10 C 0.013 3.987 11 C 0.057 3.943 12 C -0.493 4.493 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.030 0.970 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.024 0.976 30 H 0.047 0.953 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 3.303 9.312 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.201 5.201 3 C -0.116 4.116 4 C -0.042 4.042 5 C 0.037 3.963 6 F -0.127 7.127 7 C -0.198 4.198 8 C -0.116 4.116 9 C -0.151 4.151 10 C 0.012 3.988 11 C 0.020 3.980 12 C -0.532 4.532 13 H 0.070 0.930 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.049 0.951 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.889 3.069 8.672 10.417 hybrid contribution 0.431 1.164 0.434 1.315 sum -4.458 4.233 9.106 10.987 Atomic orbital electron populations 1.22493 0.87124 1.02304 1.00603 1.59354 1.07015 1.13719 1.40037 1.22398 1.01803 0.87503 0.99886 1.18771 1.01408 0.97767 0.86294 1.18624 0.95880 0.86749 0.95084 1.91364 1.72498 1.53246 1.95592 1.20794 1.03150 0.98387 0.97514 1.20921 0.97498 0.95982 0.97222 1.21194 1.01078 1.01243 0.91573 1.20649 0.89037 0.89900 0.99227 1.18279 0.97839 0.96270 0.85621 1.20859 1.12011 1.21476 0.98834 0.92999 1.24923 0.97094 0.95461 0.96677 1.69955 1.40863 1.34159 1.08421 0.86605 0.83073 0.80497 0.77876 1.20813 1.21291 1.19975 0.95129 0.91256 0.91535 0.90620 0.91402 0.95683 0.86024 0.85930 0.85361 0.95745 0.93507 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.28 60.07 0.56 0.92 16 2 N -0.48 -9.64 4.02 -186.77 -0.75 -10.39 16 3 C 0.03 0.56 9.31 60.06 0.56 1.12 16 4 C 0.05 1.07 4.72 -83.67 -0.39 0.68 16 5 C 0.06 1.06 6.68 -39.25 -0.26 0.80 16 6 F -0.15 -2.61 13.43 2.25 0.03 -2.58 16 7 C -0.18 -2.88 10.02 -39.55 -0.40 -3.27 16 8 C -0.10 -1.53 10.04 -39.55 -0.40 -1.93 16 9 C -0.13 -2.45 9.67 -39.60 -0.38 -2.83 16 10 C 0.01 0.28 5.09 -104.43 -0.53 -0.25 16 11 C 0.06 1.44 4.80 -29.04 -0.14 1.31 16 12 C -0.49 -13.61 9.09 -34.44 -0.31 -13.92 16 13 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H 0.03 0.49 6.06 -51.93 -0.31 0.17 16 21 H 0.07 1.04 8.12 -51.93 -0.42 0.61 16 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 24 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 25 H 0.02 0.42 6.36 -51.93 -0.33 0.09 16 26 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 27 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 29 H 0.02 0.65 8.05 -51.93 -0.42 0.23 16 30 H 0.05 1.29 7.62 -51.93 -0.40 0.89 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 266.58 15.07 4.02 4.02 Total: -1.00 -29.59 266.58 -6.74 -36.33 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.96 Total: -2.53 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.80 Total: -15.82 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.01 Total: -35.98 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.03 Total: -2.58 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.59 -6.74 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.500 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds