Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00222 * 2 1 4 4 C 1.39845 * 110.99856 * 123.95253 * 2 1 3 5 5 C 1.39125 * 120.08134 * 300.00174 * 4 2 1 6 6 F 1.35095 * 120.05163 * 359.74456 * 5 4 2 7 7 C 1.38235 * 119.88726 * 179.72649 * 5 4 2 8 8 C 1.38321 * 120.05329 * 359.97438 * 7 5 4 9 9 C 1.38232 * 120.16220 * 0.02562 * 8 7 5 10 10 C 1.38196 * 120.11191 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.02954 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.46853 * 265.01923 * 11 10 9 13 13 H 1.08007 * 120.00235 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99441 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00201 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47254 * 89.99979 * 16 14 12 18 18 H 1.48501 * 109.47220 * 209.99810 * 16 14 12 19 19 H 1.48498 * 109.47189 * 330.00134 * 16 14 12 20 20 H 1.08998 * 109.46964 * 296.04604 * 1 2 3 21 21 H 1.08996 * 109.47001 * 56.04925 * 1 2 3 22 22 H 1.08999 * 109.46965 * 176.04684 * 1 2 3 23 23 H 1.08992 * 109.47221 * 183.95024 * 3 2 1 24 24 H 1.09003 * 109.47058 * 303.95519 * 3 2 1 25 25 H 1.09005 * 109.47075 * 63.94934 * 3 2 1 26 26 H 1.08004 * 119.97343 * 179.97438 * 7 5 4 27 27 H 1.08006 * 119.92311 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.94919 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.46792 * 25.01779 * 11 10 9 30 30 H 1.08995 * 109.47269 * 145.01974 * 11 10 9 31 31 H 0.97008 * 119.99406 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9702 -0.7292 1.0830 5 6 1.6581 -0.3484 2.3842 6 9 0.8743 0.7297 2.6041 7 6 2.1510 -1.0755 3.4516 8 6 2.9527 -2.1799 3.2263 9 6 3.2641 -2.5601 1.9343 10 6 2.7750 -1.8381 0.8622 11 6 3.1162 -2.2539 -0.5456 12 6 4.3111 -1.4708 -1.0250 13 1 4.7766 -0.7442 -0.3754 14 6 4.8101 -1.6816 -2.2929 15 7 4.2435 -2.5667 -3.0837 16 14 6.2907 -0.7103 -2.8874 17 1 7.5349 -1.4452 -2.5447 18 1 6.2090 -0.5350 -4.3598 19 1 6.3055 0.6213 -2.2304 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5739 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 3.0828 1.3431 -0.0708 24 1 1.5899 1.9163 -0.8524 25 1 1.7044 1.8723 0.9233 26 1 1.9099 -0.7809 4.4624 27 1 3.3363 -2.7467 4.0618 28 1 3.8900 -3.4232 1.7623 29 1 3.3486 -3.3187 -0.5637 30 1 2.2664 -2.0563 -1.1989 31 1 4.5943 -2.7148 -3.9758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260111934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = -31.815791 kcal Electronic energy + Delta-G solvation = -15420.037059 eV Core-core repulsion = 12808.250868 eV Total energy + Delta-G solvation = -2611.786191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.01725 -40.53856 -37.45857 -35.32883 -32.88235 -30.66932 -28.91839 -28.51096 -25.52879 -24.99260 -22.55532 -21.88251 -18.44629 -18.14219 -17.62726 -17.37409 -16.72827 -16.44522 -15.82199 -15.47438 -14.77481 -14.65944 -14.41900 -14.19140 -13.33822 -13.16481 -13.13093 -13.09354 -12.74203 -12.63616 -12.56450 -12.39689 -12.16583 -11.46177 -11.45094 -10.50322 -9.52952 -9.48117 -9.27131 -8.10844 -6.19224 0.23620 0.42336 1.41703 1.42505 1.53105 2.44097 2.75278 2.98607 3.20860 3.28198 3.91461 4.12847 4.28533 4.37584 4.42265 4.48315 4.57649 4.64844 4.82604 4.90767 4.97437 5.16537 5.21211 5.26603 5.47991 5.55469 5.81648 5.88808 6.02505 6.05259 6.27747 6.53048 6.90352 7.45838 8.99541 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.009656 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.423357 B = 2899.084886 C = 3285.326500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.514 5.514 3 C 0.037 3.963 4 C 0.040 3.960 5 C 0.049 3.951 6 F -0.145 7.145 7 C -0.163 4.163 8 C -0.082 4.082 9 C -0.138 4.138 10 C -0.025 4.025 11 C 0.071 3.929 12 C -0.501 4.501 13 H 0.046 0.954 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.269 1.269 20 H 0.040 0.960 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.132 0.868 29 H 0.001 0.999 30 H 0.014 0.986 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 4.117 11.401 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.234 5.234 3 C -0.110 4.110 4 C -0.055 4.055 5 C 0.028 3.972 6 F -0.124 7.124 7 C -0.182 4.182 8 C -0.100 4.100 9 C -0.157 4.157 10 C -0.026 4.026 11 C 0.034 3.966 12 C -0.539 4.539 13 H 0.065 0.935 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.194 1.194 20 H 0.058 0.942 21 H 0.102 0.898 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.177 0.823 27 H 0.186 0.814 28 H 0.150 0.850 29 H 0.019 0.981 30 H 0.032 0.968 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.581 3.889 10.777 12.339 hybrid contribution 0.280 0.893 -0.140 0.947 sum -4.301 4.783 10.636 12.430 Atomic orbital electron populations 1.22488 0.85503 1.02313 1.01715 1.59304 1.08705 1.14465 1.40941 1.22334 1.00300 0.87196 1.01162 1.18811 1.01558 0.97596 0.87505 1.18670 0.96391 0.87315 0.94842 1.91368 1.72415 1.53103 1.95469 1.21265 1.01179 0.97206 0.98537 1.21319 0.96045 0.95614 0.96975 1.21335 1.00963 1.01084 0.92293 1.20382 0.92132 0.92235 0.97820 1.17898 0.95963 0.94562 0.88150 1.21116 1.12615 1.21199 0.98949 0.93547 1.25756 0.99979 0.96437 0.96901 1.70082 1.42520 1.35735 1.08795 0.85579 0.79707 0.79231 0.77301 1.19822 1.20941 1.19351 0.94197 0.89754 0.92179 0.92998 0.89870 0.94521 0.82302 0.81400 0.84977 0.98088 0.96763 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.28 127.69 1.18 2.06 16 2 N -0.51 -20.73 4.02 -744.82 -2.99 -23.73 16 3 C 0.04 1.32 9.31 127.69 1.19 2.51 16 4 C 0.04 1.63 4.72 38.21 0.18 1.81 16 5 C 0.05 1.69 6.68 22.48 0.15 1.84 16 6 F -0.14 -4.74 13.43 44.97 0.60 -4.14 16 7 C -0.16 -4.57 10.02 22.29 0.22 -4.35 16 8 C -0.08 -2.25 10.04 22.29 0.22 -2.02 16 9 C -0.14 -4.95 9.67 22.26 0.22 -4.74 16 10 C -0.02 -1.08 5.09 -19.74 -0.10 -1.18 16 11 C 0.07 3.80 4.80 29.10 0.14 3.94 16 12 C -0.50 -28.40 9.09 25.60 0.23 -28.16 16 13 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 14 C 0.01 0.38 5.46 84.65 0.46 0.84 16 15 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 16 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H 0.04 1.23 6.06 -2.39 -0.01 1.21 16 21 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 25 H 0.04 1.21 6.36 -2.38 -0.02 1.19 16 26 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 27 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.00 0.05 8.05 -2.39 -0.02 0.03 16 30 H 0.01 0.83 7.62 -2.39 -0.02 0.81 16 31 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -65.06 266.58 5.14 -59.93 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.11 Total: 4.66 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.10 Total: -27.44 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.71 Total: -79.77 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.60 Total: -4.14 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.06 5.14 -59.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.109 kcal (2) G-P(sol) polarization free energy of solvation -65.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds