Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48506 * 109.46853 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47225 * 29.99344 * 3 2 1 6 6 H 1.48493 * 109.47364 * 149.99709 * 3 2 1 7 7 C 1.37871 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47177 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.60918 * 304.67883 * 10 9 7 12 12 C 1.53344 * 109.60394 * 65.00278 * 10 9 7 13 13 C 1.53069 * 108.42739 * 187.44980 * 12 10 9 14 14 C 1.50178 * 109.82331 * 311.14190 * 13 12 10 15 15 O 1.21279 * 118.24876 * 197.53865 * 14 13 12 16 16 N 1.33182 * 123.63164 * 17.53059 * 14 13 12 17 17 C 1.46504 * 117.99142 * 177.79988 * 16 14 13 18 18 C 1.53006 * 117.49612 * 183.09952 * 17 16 14 19 19 C 1.53006 * 117.49582 * 114.44218 * 17 16 14 20 20 C 1.45751 * 124.06281 * 357.82978 * 16 14 13 21 21 H 0.97000 * 119.99968 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47144 * 59.99931 * 9 7 2 23 23 H 1.08991 * 109.47340 * 300.00160 * 9 7 2 24 24 H 1.09003 * 109.67284 * 67.71267 * 12 10 9 25 25 H 1.08998 * 109.70313 * 307.20007 * 12 10 9 26 26 H 1.08998 * 109.40033 * 71.23112 * 13 12 10 27 27 H 1.09000 * 109.39960 * 191.05799 * 13 12 10 28 28 H 1.08996 * 115.55346 * 328.77073 * 17 16 14 29 29 H 1.09003 * 117.49739 * 0.02562 * 18 17 16 30 30 H 1.08998 * 117.49440 * 145.02433 * 18 17 16 31 31 H 1.09001 * 117.49335 * 214.97724 * 19 17 16 32 32 H 1.08999 * 117.49808 * 359.97438 * 19 17 16 33 33 H 1.09005 * 109.29971 * 258.73447 * 20 16 14 34 34 H 1.08993 * 109.30656 * 139.35780 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9271 -3.5604 -0.8439 12 6 3.0437 -3.6564 1.3098 13 6 4.1516 -4.7074 1.2054 14 6 3.5772 -6.0061 0.7170 15 8 4.2256 -7.0180 0.8800 16 7 2.3941 -6.1091 0.1142 17 6 1.9751 -7.4316 -0.3569 18 6 0.6476 -7.5247 -1.1119 19 6 0.7566 -8.0675 0.3153 20 6 1.4900 -4.9874 -0.1067 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.3841 -3.8998 2.1428 25 1 3.4851 -2.6722 1.4668 26 1 4.9132 -4.3625 0.5061 27 1 4.6022 -4.8570 2.1866 28 1 2.7804 -8.0956 -0.6710 29 1 0.0862 -6.6019 -1.2584 30 1 0.5794 -8.2503 -1.9224 31 1 0.7601 -9.1500 0.4429 32 1 0.2670 -7.5022 1.1082 33 1 0.6968 -5.0114 0.6406 34 1 1.0480 -5.0708 -1.0994 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260113850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = -25.054393 kcal Electronic energy + Delta-G solvation = -15489.688457 eV Core-core repulsion = 13001.655767 eV Total energy + Delta-G solvation = -2488.032690 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34953 -37.07881 -36.30825 -33.11232 -31.92410 -30.35389 -26.95438 -24.33404 -23.22868 -22.40114 -21.78144 -20.11492 -18.06400 -16.75136 -16.43856 -16.04983 -15.17254 -14.60305 -14.41345 -14.01867 -13.90408 -13.18361 -12.63998 -12.36320 -12.10886 -11.91684 -11.49754 -11.25655 -11.01896 -10.86033 -10.73739 -10.56882 -10.46631 -10.37900 -9.84478 -9.43557 -9.36624 -9.06754 -8.43070 -8.29161 -6.07968 -4.10303 2.87812 3.16253 3.27582 3.34776 3.37190 3.89223 4.39622 4.76357 4.89689 4.98396 5.06452 5.25226 5.28050 5.33522 5.43141 5.58713 5.74480 5.80598 5.90153 5.93897 6.03947 6.08790 6.26227 6.29047 6.70556 6.72383 6.83199 6.91645 7.53484 7.65529 7.74587 7.89945 8.30888 8.44660 8.95208 9.54211 11.03305 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.006870 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.064703 B = 4074.431209 C = 4613.704864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.094 4.094 11 H 0.067 0.933 12 C -0.112 4.112 13 C -0.134 4.134 14 C 0.523 3.477 15 O -0.571 6.571 16 N -0.573 5.573 17 C 0.075 3.925 18 C -0.187 4.187 19 C -0.192 4.192 20 C 0.110 3.890 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -10.628 -0.251 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.113 4.113 11 H 0.086 0.914 12 C -0.149 4.149 13 C -0.173 4.173 14 C 0.312 3.688 15 O -0.451 6.451 16 N -0.303 5.303 17 C -0.030 4.030 18 C -0.225 4.225 19 C -0.230 4.230 20 C -0.012 4.012 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.095 -10.986 -0.149 11.185 hybrid contribution 0.236 1.022 -0.060 1.051 sum 2.331 -9.964 -0.209 10.235 Atomic orbital electron populations 1.69956 1.06058 1.26721 1.50627 1.25003 0.94822 0.99258 0.95258 0.86609 0.79862 0.83508 0.78128 1.20691 1.21262 1.19826 1.21166 0.93031 0.90654 1.50803 0.92393 1.19055 0.93363 0.90543 0.97589 1.21582 0.98833 0.93550 0.97308 0.91423 1.21700 0.96068 0.99005 0.98158 1.21721 1.00095 0.92583 1.02944 1.20287 0.80170 0.91547 0.76761 1.90644 1.59124 1.37654 1.57668 1.46888 1.18668 1.07796 1.56972 1.21634 0.91616 0.87287 1.02418 1.23387 0.99756 1.03829 0.95510 1.23332 1.02876 1.00866 0.95945 1.21778 0.92483 0.85496 1.01430 0.92935 0.96256 0.96150 0.92113 0.89233 0.88592 0.88889 0.85459 0.87674 0.88041 0.88400 0.88582 0.91950 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.50 8.32 -34.44 -0.29 -13.79 16 8 H 0.06 1.46 7.11 -52.49 -0.37 1.09 16 9 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 10 C -0.09 -1.74 2.20 -90.48 -0.20 -1.94 16 11 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 12 C -0.11 -1.92 5.23 -26.52 -0.14 -2.05 16 13 C -0.13 -2.07 6.04 -28.10 -0.17 -2.24 16 14 C 0.52 9.10 7.46 -11.95 -0.09 9.01 16 15 O -0.57 -11.38 16.40 5.56 0.09 -11.29 16 16 N -0.57 -9.18 3.14 -167.41 -0.53 -9.70 16 17 C 0.08 1.06 5.91 -67.92 -0.40 0.66 16 18 C -0.19 -2.13 9.66 -26.69 -0.26 -2.39 16 19 C -0.19 -2.29 10.36 -26.69 -0.28 -2.57 16 20 C 0.11 1.77 4.85 -4.48 -0.02 1.75 16 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 25 H 0.09 1.63 6.82 -51.93 -0.35 1.28 16 26 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.13 1.84 7.60 -51.93 -0.39 1.44 16 29 H 0.11 1.23 6.18 -51.93 -0.32 0.91 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 34 H 0.07 1.13 6.40 -51.93 -0.33 0.80 16 LS Contribution 277.39 15.07 4.18 4.18 Total: -1.00 -29.65 277.39 -7.73 -37.39 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.13 Total: 0.04 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.06 Total: -11.46 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.21 Total: -34.59 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.65 -7.73 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.334 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds