Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48506 * 109.46853 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47225 * 29.99344 * 3 2 1 6 6 H 1.48493 * 109.47364 * 149.99709 * 3 2 1 7 7 C 1.37871 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00100 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47177 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.60918 * 304.67883 * 10 9 7 12 12 C 1.53344 * 109.60394 * 65.00278 * 10 9 7 13 13 C 1.53069 * 108.42739 * 187.44980 * 12 10 9 14 14 C 1.50178 * 109.82331 * 311.14190 * 13 12 10 15 15 O 1.21279 * 118.24876 * 197.53865 * 14 13 12 16 16 N 1.33182 * 123.63164 * 17.53059 * 14 13 12 17 17 C 1.46504 * 117.99142 * 177.79988 * 16 14 13 18 18 C 1.53006 * 117.49612 * 183.09952 * 17 16 14 19 19 C 1.53006 * 117.49582 * 114.44218 * 17 16 14 20 20 C 1.45751 * 124.06281 * 357.82978 * 16 14 13 21 21 H 0.97000 * 119.99968 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47144 * 59.99931 * 9 7 2 23 23 H 1.08991 * 109.47340 * 300.00160 * 9 7 2 24 24 H 1.09003 * 109.67284 * 67.71267 * 12 10 9 25 25 H 1.08998 * 109.70313 * 307.20007 * 12 10 9 26 26 H 1.08998 * 109.40033 * 71.23112 * 13 12 10 27 27 H 1.09000 * 109.39960 * 191.05799 * 13 12 10 28 28 H 1.08996 * 115.55346 * 328.77073 * 17 16 14 29 29 H 1.09003 * 117.49739 * 0.02562 * 18 17 16 30 30 H 1.08998 * 117.49440 * 145.02433 * 18 17 16 31 31 H 1.09001 * 117.49335 * 214.97724 * 19 17 16 32 32 H 1.08999 * 117.49808 * 359.97438 * 19 17 16 33 33 H 1.09005 * 109.29971 * 258.73447 * 20 16 14 34 34 H 1.08993 * 109.30656 * 139.35780 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9271 -3.5604 -0.8439 12 6 3.0437 -3.6564 1.3098 13 6 4.1516 -4.7074 1.2054 14 6 3.5772 -6.0061 0.7170 15 8 4.2256 -7.0180 0.8800 16 7 2.3941 -6.1091 0.1142 17 6 1.9751 -7.4316 -0.3569 18 6 0.6476 -7.5247 -1.1119 19 6 0.7566 -8.0675 0.3153 20 6 1.4900 -4.9874 -0.1067 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.3841 -3.8998 2.1428 25 1 3.4851 -2.6722 1.4668 26 1 4.9132 -4.3625 0.5061 27 1 4.6022 -4.8570 2.1866 28 1 2.7804 -8.0956 -0.6710 29 1 0.0862 -6.6019 -1.2584 30 1 0.5794 -8.2503 -1.9224 31 1 0.7601 -9.1500 0.4429 32 1 0.2670 -7.5022 1.1082 33 1 0.6968 -5.0114 0.6406 34 1 1.0480 -5.0708 -1.0994 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260113850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = -41.921435 kcal Electronic energy + Delta-G solvation = -15490.419867 eV Core-core repulsion = 13001.655767 eV Total energy + Delta-G solvation = -2488.764099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.65904 -38.31547 -37.71692 -34.95362 -33.32921 -31.92352 -28.66880 -25.79337 -24.85955 -23.50069 -22.94269 -21.59279 -19.47430 -18.35449 -17.96666 -17.39363 -16.64118 -16.34885 -15.58560 -15.38697 -15.20666 -14.61889 -14.23652 -14.02888 -13.59872 -13.36194 -12.92443 -12.77413 -12.45353 -12.35207 -12.29086 -12.00479 -11.95384 -11.48452 -11.38347 -11.15962 -11.11413 -10.63673 -10.48915 -9.53589 -8.15039 -6.23068 1.44347 1.45449 1.55170 1.55214 1.93339 2.45249 2.88859 3.20011 3.61438 3.76119 3.89284 3.90468 4.00422 4.03722 4.10442 4.46327 4.55399 4.58318 4.73469 4.77263 4.87493 4.95787 5.03239 5.14138 5.18632 5.24921 5.37789 5.52193 5.55701 5.76192 5.88784 6.29076 6.44346 6.92221 7.11410 7.45448 8.96689 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.006870 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.064703 B = 4074.431209 C = 4613.704864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.039 3.961 10 C -0.086 4.086 11 H 0.065 0.935 12 C -0.105 4.105 13 C -0.125 4.125 14 C 0.516 3.484 15 O -0.600 6.600 16 N -0.571 5.571 17 C 0.044 3.956 18 C -0.168 4.168 19 C -0.184 4.184 20 C 0.119 3.881 21 H 0.261 0.739 22 H -0.002 1.002 23 H -0.001 1.001 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -11.070 -0.442 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.083 0.917 9 C 0.001 3.999 10 C -0.105 4.105 11 H 0.084 0.916 12 C -0.142 4.142 13 C -0.164 4.164 14 C 0.306 3.694 15 O -0.482 6.482 16 N -0.300 5.300 17 C -0.060 4.060 18 C -0.205 4.205 19 C -0.222 4.222 20 C -0.003 4.003 21 H 0.070 0.930 22 H 0.016 0.984 23 H 0.017 0.983 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.704 -11.436 -0.349 11.756 hybrid contribution 0.006 1.121 -0.014 1.121 sum 2.710 -10.315 -0.363 10.671 Atomic orbital electron populations 1.70079 1.07631 1.27517 1.52136 1.25845 0.95592 1.02903 0.95188 0.85588 0.78868 0.79232 0.78221 1.20247 1.21352 1.18637 1.21608 0.93612 0.91761 1.49582 0.91695 1.18893 0.93671 0.91859 0.95450 1.21366 0.97897 0.93083 0.98152 0.91610 1.21580 0.96391 0.99079 0.97189 1.21679 0.99532 0.91002 1.04209 1.20588 0.80400 0.91722 0.76663 1.90630 1.59933 1.38599 1.59074 1.46875 1.18227 1.08548 1.56315 1.21821 0.92629 0.86525 1.05024 1.23474 0.96980 1.04131 0.95941 1.23394 1.00786 1.01823 0.96205 1.21596 0.92029 0.84437 1.02193 0.92996 0.98388 0.98252 0.92176 0.90274 0.87376 0.87235 0.86063 0.87940 0.85614 0.86536 0.89236 0.91798 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.53 -27.42 8.32 25.60 0.21 -27.21 16 8 H 0.06 3.22 7.11 -2.91 -0.02 3.19 16 9 C 0.04 1.83 4.45 29.85 0.13 1.97 16 10 C -0.09 -3.14 2.20 -10.70 -0.02 -3.16 16 11 H 0.07 2.43 8.12 -2.38 -0.02 2.41 16 12 C -0.10 -3.49 5.23 30.73 0.16 -3.33 16 13 C -0.12 -3.66 6.04 29.71 0.18 -3.49 16 14 C 0.52 17.35 7.46 87.74 0.65 18.00 16 15 O -0.60 -23.37 16.40 -3.03 -0.05 -23.42 16 16 N -0.57 -17.57 3.14 -802.85 -2.52 -20.09 16 17 C 0.04 1.17 5.91 44.99 0.27 1.44 16 18 C -0.17 -3.41 9.66 30.62 0.30 -3.11 16 19 C -0.18 -4.00 10.36 30.62 0.32 -3.69 16 20 C 0.12 3.73 4.85 86.50 0.42 4.15 16 21 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 22 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 23 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 25 H 0.08 2.81 6.82 -2.39 -0.02 2.79 16 26 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.12 3.37 7.60 -2.39 -0.02 3.36 16 29 H 0.10 2.17 6.18 -2.39 -0.01 2.15 16 30 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.99 8.12 -2.38 -0.02 1.98 16 34 H 0.09 2.49 6.40 -2.39 -0.02 2.48 16 Total: -1.00 -62.69 277.39 3.89 -58.80 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.07 Total: 12.01 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.08 Total: -17.84 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -2.23 Total: -73.87 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -62.69 3.89 -58.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260113850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.880 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds