Wall clock time and date at job start Mon Mar 30 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.09004 * 112.73950 * 310.74129 * 9 7 2 11 11 C 1.53494 * 113.46830 * 81.56768 * 9 7 2 12 12 C 1.53491 * 83.34720 * 88.70921 * 11 9 7 13 13 N 1.47065 * 87.98433 * 26.06806 * 12 11 9 14 14 C 1.34773 * 136.05793 * 152.84342 * 13 12 11 15 15 O 1.21282 * 120.00430 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00003 * 0.04889 * 14 13 12 17 17 C 1.54262 * 110.03585 * 297.16579 * 16 14 13 18 18 C 1.54886 * 104.19916 * 217.10402 * 17 16 14 19 19 C 1.54892 * 102.74716 * 37.94404 * 18 17 16 20 20 C 1.53881 * 110.03224 * 179.97438 * 16 14 13 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.08997 * 114.20581 * 202.30137 * 11 9 7 23 23 H 1.09003 * 114.20627 * 335.12071 * 11 9 7 24 24 H 1.09002 * 113.47022 * 271.28422 * 12 11 9 25 25 H 1.09004 * 113.52059 * 140.85730 * 12 11 9 26 26 H 1.08997 * 110.01871 * 58.61141 * 16 14 13 27 27 H 1.09003 * 110.48721 * 335.78523 * 17 16 14 28 28 H 1.09005 * 110.48492 * 98.42415 * 17 16 14 29 29 H 1.08994 * 110.76100 * 279.62617 * 18 17 16 30 30 H 1.09004 * 110.75519 * 156.25051 * 18 17 16 31 31 H 1.08998 * 110.48233 * 203.38029 * 19 18 17 32 32 H 1.08994 * 110.48953 * 80.73338 * 19 18 17 33 33 H 1.09004 * 110.03092 * 238.56959 * 20 16 14 34 34 H 1.08991 * 110.03191 * 359.94740 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.4719 -2.5358 0.7619 11 6 0.7672 -2.9256 -1.3923 12 6 2.1431 -3.6018 -1.4673 13 7 2.1266 -3.6808 0.0011 14 6 2.6728 -4.4833 0.9360 15 8 2.4596 -4.2771 2.1119 16 6 3.5490 -5.6368 0.5201 17 6 2.7336 -6.6457 -0.3148 18 6 3.2793 -8.0282 0.1209 19 6 3.5164 -7.8389 1.6398 20 6 4.0472 -6.3951 1.7629 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.0723 -3.6206 -1.3803 23 1 0.6361 -2.1002 -2.0920 24 1 2.9256 -2.9515 -1.8583 25 1 2.1228 -4.5765 -1.9547 26 1 4.3972 -5.2713 -0.0587 27 1 1.6719 -6.5639 -0.0817 28 1 2.9047 -6.4862 -1.3795 29 1 4.2149 -8.2530 -0.3910 30 1 2.5411 -8.8094 -0.0604 31 1 4.2588 -8.5502 2.0015 32 1 2.5812 -7.9497 2.1886 33 1 5.1370 -6.3984 1.7863 34 1 3.6561 -5.9283 2.6668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260133955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:36 Heat of formation + Delta-G solvation = -22.539245 kcal Electronic energy + Delta-G solvation = -15638.592444 eV Core-core repulsion = 13150.668820 eV Total energy + Delta-G solvation = -2487.923625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79281 -37.94550 -36.20465 -32.73017 -29.95613 -28.58463 -27.84987 -25.98717 -23.44761 -22.08553 -20.69004 -19.88052 -18.28652 -17.12391 -16.12855 -15.53889 -15.32121 -14.72226 -14.07999 -13.76583 -13.35735 -13.17540 -12.72419 -12.17076 -11.74424 -11.54008 -11.34940 -11.09194 -11.01327 -10.94452 -10.84626 -10.66273 -10.52342 -10.37364 -10.15557 -9.74653 -9.21161 -8.85577 -8.47195 -7.61336 -6.50828 -4.25192 3.33914 3.39613 3.42137 3.59750 3.78146 4.44652 4.61745 4.71836 4.86404 5.16847 5.28316 5.49772 5.51033 5.53089 5.60367 5.67591 5.75704 5.82196 5.92230 5.97460 6.01445 6.10704 6.29794 6.35942 6.47586 6.49814 6.64274 6.77923 6.81371 7.10660 7.98065 8.25963 8.66369 8.75810 8.99108 9.48426 10.87180 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048024 B = 0.007072 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.902288 B = 3958.540861 C = 4190.449531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.028 3.972 3 Si 1.072 2.928 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.600 4.600 8 H 0.055 0.945 9 C 0.261 3.739 10 H 0.033 0.967 11 C -0.167 4.167 12 C 0.116 3.884 13 N -0.634 5.634 14 C 0.536 3.464 15 O -0.556 6.556 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.119 4.119 21 H 0.271 0.729 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -12.353 -3.939 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.900 3.100 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.638 4.638 8 H 0.074 0.926 9 C 0.160 3.840 10 H 0.051 0.949 11 C -0.206 4.206 12 C -0.008 4.008 13 N -0.367 5.367 14 C 0.324 3.676 15 O -0.435 6.435 16 C -0.130 4.130 17 C -0.149 4.149 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.157 4.157 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.685 -10.721 -3.148 12.537 hybrid contribution 0.350 -1.646 -0.109 1.686 sum 6.035 -12.366 -3.257 14.141 Atomic orbital electron populations 1.70792 1.06789 1.30889 1.44880 1.25858 0.96402 1.02562 0.92974 0.83491 0.74906 0.74927 0.76705 1.20519 1.21312 1.21235 1.21909 0.94523 0.90604 1.56769 0.92639 1.20167 0.88022 0.84071 0.91756 0.94876 1.23554 0.94551 1.00099 1.02371 1.22785 0.98487 0.98540 0.80961 1.50059 1.49631 1.30006 1.07025 1.19903 0.79740 0.83093 0.84827 1.90604 1.61866 1.73611 1.17424 1.21866 0.98196 0.94653 0.98250 1.22315 0.99783 0.93715 0.99065 1.22506 1.00675 0.96727 0.96166 1.22360 1.00998 0.96503 0.96162 1.22164 1.00048 0.94688 0.98795 0.91804 0.91719 0.89860 0.90169 0.92670 0.89253 0.91309 0.91221 0.91484 0.91623 0.91819 0.91643 0.91874 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.65 55.43 0.76 -25.57 16 2 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 3 Si 1.07 24.74 29.90 -169.99 -5.08 19.65 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.60 -16.74 8.47 -34.44 -0.29 -17.03 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.26 6.69 3.51 -73.55 -0.26 6.43 16 10 H 0.03 0.96 7.64 -51.93 -0.40 0.56 16 11 C -0.17 -3.49 7.94 -26.22 -0.21 -3.70 16 12 C 0.12 2.16 7.85 -8.51 -0.07 2.09 16 13 N -0.63 -14.22 3.45 -178.82 -0.62 -14.84 16 14 C 0.54 11.75 7.24 -10.99 -0.08 11.67 16 15 O -0.56 -14.43 15.98 5.56 0.09 -14.34 16 16 C -0.11 -1.75 3.15 -90.65 -0.29 -2.03 16 17 C -0.11 -1.49 5.59 -25.08 -0.14 -1.63 16 18 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 19 C -0.12 -1.48 6.83 -25.04 -0.17 -1.65 16 20 C -0.12 -1.76 6.40 -25.58 -0.16 -1.93 16 21 H 0.27 7.90 6.99 -40.82 -0.29 7.61 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 23 H 0.08 1.80 8.10 -51.93 -0.42 1.38 16 24 H 0.08 1.51 7.97 -51.93 -0.41 1.09 16 25 H 0.05 0.83 6.83 -51.93 -0.35 0.48 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.02 7.85 -51.93 -0.41 0.62 16 28 H 0.07 0.83 7.36 -51.93 -0.38 0.45 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.59 6.39 -51.93 -0.33 1.25 16 LS Contribution 277.60 15.07 4.18 4.18 Total: -1.00 -31.90 277.60 -7.76 -39.66 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.16 Total: -0.13 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.93 Total: -8.61 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.14 Total: -40.41 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.34 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.90 -7.76 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.120 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds