Wall clock time and date at job start Mon Mar 30 2020 02:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.09004 * 112.73950 * 310.74129 * 9 7 2 11 11 C 1.53494 * 113.46830 * 81.56768 * 9 7 2 12 12 C 1.53491 * 83.34720 * 88.70921 * 11 9 7 13 13 N 1.47065 * 87.98433 * 26.06806 * 12 11 9 14 14 C 1.34773 * 136.05793 * 152.84342 * 13 12 11 15 15 O 1.21282 * 120.00430 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00003 * 0.04889 * 14 13 12 17 17 C 1.54262 * 110.03585 * 297.16579 * 16 14 13 18 18 C 1.54886 * 104.19916 * 217.10402 * 17 16 14 19 19 C 1.54892 * 102.74716 * 37.94404 * 18 17 16 20 20 C 1.53881 * 110.03224 * 179.97438 * 16 14 13 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.08997 * 114.20581 * 202.30137 * 11 9 7 23 23 H 1.09003 * 114.20627 * 335.12071 * 11 9 7 24 24 H 1.09002 * 113.47022 * 271.28422 * 12 11 9 25 25 H 1.09004 * 113.52059 * 140.85730 * 12 11 9 26 26 H 1.08997 * 110.01871 * 58.61141 * 16 14 13 27 27 H 1.09003 * 110.48721 * 335.78523 * 17 16 14 28 28 H 1.09005 * 110.48492 * 98.42415 * 17 16 14 29 29 H 1.08994 * 110.76100 * 279.62617 * 18 17 16 30 30 H 1.09004 * 110.75519 * 156.25051 * 18 17 16 31 31 H 1.08998 * 110.48233 * 203.38029 * 19 18 17 32 32 H 1.08994 * 110.48953 * 80.73338 * 19 18 17 33 33 H 1.09004 * 110.03092 * 238.56959 * 20 16 14 34 34 H 1.08991 * 110.03191 * 359.94740 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.4719 -2.5358 0.7619 11 6 0.7672 -2.9256 -1.3923 12 6 2.1431 -3.6018 -1.4673 13 7 2.1266 -3.6808 0.0011 14 6 2.6728 -4.4833 0.9360 15 8 2.4596 -4.2771 2.1119 16 6 3.5490 -5.6368 0.5201 17 6 2.7336 -6.6457 -0.3148 18 6 3.2793 -8.0282 0.1209 19 6 3.5164 -7.8389 1.6398 20 6 4.0472 -6.3951 1.7629 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.0723 -3.6206 -1.3803 23 1 0.6361 -2.1002 -2.0920 24 1 2.9256 -2.9515 -1.8583 25 1 2.1228 -4.5765 -1.9547 26 1 4.3972 -5.2713 -0.0587 27 1 1.6719 -6.5639 -0.0817 28 1 2.9047 -6.4862 -1.3795 29 1 4.2149 -8.2530 -0.3910 30 1 2.5411 -8.8094 -0.0604 31 1 4.2588 -8.5502 2.0015 32 1 2.5812 -7.9497 2.1886 33 1 5.1370 -6.3984 1.7863 34 1 3.6561 -5.9283 2.6668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260133955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:35 Heat of formation + Delta-G solvation = -42.966938 kcal Electronic energy + Delta-G solvation = -15639.478255 eV Core-core repulsion = 13150.668820 eV Total energy + Delta-G solvation = -2488.809436 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45566 -39.47973 -37.71252 -34.84874 -31.49113 -29.65296 -29.24792 -27.98971 -25.37071 -23.65519 -21.73422 -21.33526 -20.01463 -18.79182 -17.90601 -17.16297 -16.72002 -16.26617 -15.70734 -15.39654 -14.93786 -14.53764 -14.29172 -13.97052 -13.44242 -13.23683 -12.74517 -12.68405 -12.41103 -12.18574 -12.03874 -11.98661 -11.93093 -11.68715 -11.57835 -11.42445 -11.23081 -10.61612 -10.57834 -9.49627 -8.74121 -6.50410 1.50427 1.58342 1.66349 1.78939 2.11081 2.51685 3.05725 3.43957 3.61528 3.71872 3.77725 4.11997 4.28931 4.42011 4.44863 4.48754 4.54645 4.62495 4.64940 4.77881 4.85643 4.88447 4.95690 5.04325 5.06267 5.18955 5.20622 5.22732 5.39559 5.44903 5.87926 6.01194 6.41936 7.02896 7.19444 7.35416 8.63120 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048024 B = 0.007072 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.902288 B = 3958.540861 C = 4190.449531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.018 4.018 3 Si 1.118 2.882 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.612 4.612 8 H 0.045 0.955 9 C 0.238 3.762 10 H -0.017 1.017 11 C -0.150 4.150 12 C 0.130 3.870 13 N -0.641 5.641 14 C 0.521 3.479 15 O -0.611 6.611 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.123 4.123 21 H 0.260 0.740 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 -14.009 -6.083 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.650 4.650 8 H 0.063 0.937 9 C 0.135 3.865 10 H 0.001 0.999 11 C -0.189 4.189 12 C 0.009 3.991 13 N -0.373 5.373 14 C 0.313 3.687 15 O -0.495 6.495 16 C -0.122 4.122 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.160 4.160 21 H 0.069 0.931 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.490 -12.416 -5.335 15.451 hybrid contribution -0.241 -1.150 0.655 1.345 sum 7.249 -13.566 -4.680 16.077 Atomic orbital electron populations 1.70904 1.07639 1.30203 1.46859 1.27292 0.96485 1.06091 0.91952 0.82924 0.74187 0.71135 0.77887 1.20315 1.20976 1.18294 1.22133 0.94122 0.92035 1.56745 0.93652 1.20193 0.87999 0.85158 0.93140 0.99902 1.23395 0.96893 1.00265 0.98309 1.22839 0.96619 1.00922 0.78753 1.50196 1.49140 1.28873 1.09085 1.21151 0.79490 0.84026 0.84027 1.90572 1.63811 1.75175 1.19893 1.21974 0.97768 0.92853 0.99563 1.22365 0.98148 0.94275 0.99927 1.22500 1.02190 0.95444 0.94785 1.22369 1.00938 0.95010 0.97497 1.22203 1.01279 0.96082 0.96486 0.93078 0.89908 0.90629 0.89920 0.87645 0.87279 0.93342 0.88695 0.89033 0.89947 0.89287 0.93093 0.89741 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.65 21.45 0.29 -55.16 16 2 C -0.02 -1.02 5.46 84.65 0.46 -0.55 16 3 Si 1.12 49.85 29.90 68.60 2.05 51.90 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.61 -35.02 8.47 25.60 0.22 -34.80 16 8 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 9 C 0.24 12.61 3.51 41.04 0.14 12.75 16 10 H -0.02 -1.04 7.64 -2.38 -0.02 -1.06 16 11 C -0.15 -6.21 7.94 30.93 0.25 -5.96 16 12 C 0.13 4.57 7.85 83.18 0.65 5.23 16 13 N -0.64 -28.82 3.45 -838.05 -2.89 -31.71 16 14 C 0.52 23.19 7.24 87.66 0.63 23.83 16 15 O -0.61 -33.44 15.98 -3.03 -0.05 -33.49 16 16 C -0.10 -3.05 3.15 -10.81 -0.03 -3.09 16 17 C -0.11 -2.55 5.59 31.67 0.18 -2.38 16 18 C -0.11 -1.97 6.91 31.88 0.22 -1.75 16 19 C -0.12 -2.60 6.83 31.69 0.22 -2.38 16 20 C -0.12 -3.47 6.40 31.34 0.20 -3.27 16 21 H 0.26 15.81 6.99 -92.70 -0.65 15.17 16 22 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 23 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16 24 H 0.08 2.90 7.97 -2.39 -0.02 2.88 16 25 H 0.11 2.69 6.83 -2.39 -0.02 2.67 16 26 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 28 H 0.09 1.75 7.36 -2.38 -0.02 1.73 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.05 1.85 6.39 -2.39 -0.02 1.84 16 Total: -1.00 -74.02 277.60 3.73 -70.29 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.19 Total: 10.55 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 3.14 Total: -12.38 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.60 Total: -86.87 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.05 Total: -33.49 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -74.02 3.73 -70.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260133955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.326 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds