Wall clock time and date at job start Mon Mar 30 2020 02:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48494 * 109.47202 * 269.99587 * 3 2 1 5 5 H 1.48499 * 109.47359 * 30.00099 * 3 2 1 6 6 H 1.48508 * 109.46884 * 150.00125 * 3 2 1 7 7 C 1.37875 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46932 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47012 * 180.02562 * 10 9 7 12 12 C 1.53499 * 114.20556 * 174.99992 * 11 10 9 13 13 N 1.47072 * 87.98256 * 139.65727 * 12 11 10 14 14 C 1.34777 * 136.05745 * 152.84894 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27198 * 14 13 12 17 17 C 1.52999 * 117.49844 * 248.46973 * 16 14 13 18 18 C 1.52996 * 117.49546 * 179.81078 * 16 14 13 19 19 C 1.47067 * 87.88518 * 333.09734 * 13 12 11 20 20 H 0.96994 * 119.99888 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47014 * 59.99993 * 9 7 2 22 22 H 1.09001 * 109.47059 * 300.00337 * 9 7 2 23 23 H 1.08999 * 109.47232 * 60.00181 * 10 9 7 24 24 H 1.09001 * 109.47245 * 299.99643 * 10 9 7 25 25 H 1.09000 * 113.41263 * 41.79651 * 11 10 9 26 26 H 1.08991 * 113.46673 * 24.87527 * 12 11 10 27 27 H 1.08996 * 113.51809 * 254.44041 * 12 11 10 28 28 H 1.08995 * 115.54871 * 34.13521 * 16 14 13 29 29 H 1.09007 * 117.49732 * 359.97438 * 17 16 14 30 30 H 1.08998 * 117.49972 * 145.01907 * 17 16 14 31 31 H 1.09004 * 117.49547 * 214.97632 * 18 16 14 32 32 H 1.08995 * 117.50518 * 359.97085 * 18 16 14 33 33 H 1.09000 * 113.46426 * 141.67517 * 19 13 12 34 34 H 1.08998 * 113.47159 * 272.12208 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 2.3736 -6.2294 -0.1222 13 7 1.5079 -6.8854 0.8693 14 6 1.1557 -8.1528 1.1628 15 8 1.6032 -9.0728 0.5114 16 6 0.2007 -8.4263 2.2961 17 6 0.7583 -9.1284 3.5359 18 6 -0.1632 -9.8857 2.5764 19 6 1.1905 -5.5493 1.3957 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 0.6183 -4.9892 -0.6671 26 1 3.3923 -6.0679 0.2302 27 1 2.3373 -6.6962 -1.1065 28 1 -0.5748 -7.6759 2.4488 29 1 1.8158 -9.3929 3.5317 30 1 0.3492 -8.8402 4.5042 31 1 -1.1783 -10.0953 2.9140 32 1 0.2876 -10.6479 1.9410 33 1 0.1495 -5.4383 1.6990 34 1 1.8909 -5.2048 2.1565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260141625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:33 Heat of formation + Delta-G solvation = -8.689291 kcal Electronic energy + Delta-G solvation = -14686.393408 eV Core-core repulsion = 12199.070362 eV Total energy + Delta-G solvation = -2487.323046 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.53503 -39.57447 -36.95478 -35.66013 -33.44564 -30.43485 -27.35993 -26.92700 -24.80088 -23.35480 -22.85828 -21.19398 -19.84969 -18.48263 -18.27737 -17.09522 -16.72299 -16.44401 -15.93019 -15.45150 -14.77420 -14.59955 -14.30288 -13.63329 -13.53576 -13.44536 -13.24630 -12.79929 -12.49068 -12.42339 -12.19250 -11.97350 -11.60788 -11.51989 -11.44162 -11.19390 -11.01425 -10.75075 -10.48338 -9.77153 -8.14942 -6.24731 1.39803 1.44213 1.44427 1.55264 1.77257 2.45127 2.88536 3.19105 3.31163 3.51033 3.79758 3.95840 4.02368 4.07976 4.16654 4.42240 4.53851 4.62260 4.65130 4.69832 4.72533 4.88284 4.95363 4.99485 5.04488 5.19686 5.31772 5.38063 5.60446 5.84455 5.93775 6.31653 6.67998 6.93741 7.03997 7.44575 8.96436 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.059456 B = 0.004515 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.824431 B = 6200.428003 C = 6413.199313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.084 4.084 11 C -0.114 4.114 12 C 0.105 3.895 13 N -0.646 5.646 14 C 0.559 3.441 15 O -0.595 6.595 16 C -0.203 4.203 17 C -0.137 4.137 18 C -0.146 4.146 19 C 0.112 3.888 20 H 0.262 0.738 21 H -0.011 1.011 22 H 0.000 1.000 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -13.658 6.852 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.122 4.122 11 C -0.134 4.134 12 C -0.017 4.017 13 N -0.379 5.379 14 C 0.351 3.649 15 O -0.477 6.477 16 C -0.224 4.224 17 C -0.174 4.174 18 C -0.183 4.183 19 C -0.010 4.010 20 H 0.071 0.929 21 H 0.007 0.993 22 H 0.018 0.982 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.107 0.893 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.090 -14.252 6.572 15.732 hybrid contribution 0.175 1.107 -0.372 1.181 sum 1.265 -13.145 6.200 14.589 Atomic orbital electron populations 1.70085 1.07692 1.27564 1.52043 1.25905 0.95666 1.03100 0.95007 0.85544 0.78826 0.78969 0.78289 1.20177 1.21025 1.18659 1.21766 0.93649 0.92542 1.49943 0.92100 1.19006 0.94452 0.92693 0.95117 1.21328 0.97630 0.91645 1.01567 1.22864 0.99194 0.93676 0.97619 1.23187 0.95825 0.89663 0.93025 1.49709 1.47083 1.05086 1.36039 1.19882 0.81029 0.79830 0.84110 1.90642 1.58819 1.44090 1.54115 1.22172 1.02682 1.00110 0.97434 1.23057 0.99963 1.00788 0.93636 1.23048 1.02184 0.91347 1.01765 1.23213 1.03006 0.77604 0.97204 0.92948 0.99257 0.98184 0.91596 0.92321 0.89083 0.88263 0.91140 0.84305 0.89296 0.84895 0.85240 0.89399 0.89427 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.54 -29.31 9.11 25.60 0.23 -29.08 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.19 4.96 29.85 0.15 1.34 16 10 C -0.08 -3.00 5.07 30.59 0.16 -2.85 16 11 C -0.11 -3.42 3.99 -10.54 -0.04 -3.46 16 12 C 0.11 2.90 8.20 83.18 0.68 3.58 16 13 N -0.65 -18.43 3.69 -858.74 -3.17 -21.60 16 14 C 0.56 17.00 7.86 87.66 0.69 17.69 16 15 O -0.59 -22.52 17.03 -3.04 -0.05 -22.57 16 16 C -0.20 -4.43 6.01 -11.54 -0.07 -4.49 16 17 C -0.14 -2.31 10.24 30.62 0.31 -2.00 16 18 C -0.15 -2.68 10.05 30.62 0.31 -2.38 16 19 C 0.11 2.88 7.98 83.10 0.66 3.55 16 20 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 23 H 0.07 2.21 7.81 -2.39 -0.02 2.20 16 24 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.09 2.91 8.12 -2.39 -0.02 2.89 16 26 H 0.10 2.44 8.10 -2.39 -0.02 2.42 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.97 7.67 -2.39 -0.02 1.95 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.10 2.39 7.88 -2.39 -0.02 2.38 16 Total: -1.00 -67.54 292.71 3.69 -63.85 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.06 Total: 7.83 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 3.54 Total: -17.59 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.89 Total: -76.53 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.54 3.69 -63.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.161 kcal (2) G-P(sol) polarization free energy of solvation -67.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds