Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48499 * 109.47331 * 270.00013 * 3 2 1 5 5 H 1.48504 * 109.47005 * 30.00321 * 3 2 1 6 6 H 1.48509 * 109.46861 * 149.99696 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46786 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.88044 * 302.63945 * 10 9 7 12 12 C 1.54623 * 110.97415 * 66.45113 * 10 9 7 13 13 C 1.51282 * 104.31101 * 93.25686 * 12 10 9 14 14 O 1.21281 * 124.94192 * 196.29810 * 13 12 10 15 15 N 1.34735 * 109.93792 * 16.31290 * 13 12 10 16 16 C 1.46501 * 124.30373 * 180.38847 * 15 13 12 17 17 C 1.53784 * 113.61218 * 39.09452 * 16 15 13 18 18 C 1.53955 * 87.02160 * 220.05089 * 17 16 15 19 19 C 1.53781 * 87.11057 * 25.36564 * 18 17 16 20 20 C 1.46768 * 111.35098 * 0.35387 * 15 13 12 21 21 H 0.96993 * 120.00260 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47758 * 60.00197 * 9 7 2 23 23 H 1.09001 * 109.47316 * 299.99623 * 9 7 2 24 24 H 1.09002 * 110.48860 * 212.00160 * 12 10 9 25 25 H 1.08998 * 110.48497 * 334.51053 * 12 10 9 26 26 H 1.08995 * 112.85130 * 170.29449 * 16 15 13 27 27 H 1.08999 * 113.61633 * 334.57305 * 17 16 15 28 28 H 1.09003 * 113.60781 * 105.47162 * 17 16 15 29 29 H 1.09001 * 113.53320 * 270.81437 * 18 17 16 30 30 H 1.08997 * 113.74181 * 139.94999 * 18 17 16 31 31 H 1.09001 * 113.60994 * 220.09320 * 19 18 17 32 32 H 1.08994 * 113.69035 * 89.19421 * 19 18 17 33 33 H 1.09000 * 110.24529 * 224.01554 * 20 15 13 34 34 H 1.09008 * 110.31722 * 102.05615 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 1 2.9160 -3.6000 -0.8585 12 6 3.0424 -3.7084 1.3227 13 6 2.2565 -4.6586 2.1991 14 8 2.3799 -4.7575 3.4016 15 7 1.4011 -5.3773 1.4460 16 6 0.4811 -6.3863 1.9768 17 6 -0.1557 -5.9933 3.3203 18 6 0.0335 -7.4603 3.7475 19 6 1.1857 -7.5263 2.7312 20 6 1.5084 -5.0194 0.0267 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 4.0478 -4.0923 1.1496 25 1 3.0860 -2.7184 1.7766 26 1 -0.2399 -6.7328 1.2365 27 1 0.4432 -5.2895 3.8981 28 1 -1.2003 -5.6931 3.2370 29 1 -0.8111 -8.1003 3.4922 30 1 0.3563 -7.5779 4.7819 31 1 1.2225 -8.4618 2.1731 32 1 2.1527 -7.2427 3.1465 33 1 0.5161 -4.9192 -0.4131 34 1 2.0844 -5.7726 -0.5111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -26.369027 kcal Electronic energy + Delta-G solvation = -15600.502938 eV Core-core repulsion = 13112.413241 eV Total energy + Delta-G solvation = -2488.089696 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34805 -37.59647 -36.09770 -33.19626 -31.31674 -27.87574 -26.67205 -25.47221 -24.59827 -22.94042 -20.38117 -19.62584 -18.35662 -16.68104 -16.30571 -15.55966 -15.21702 -14.47793 -14.32390 -13.55030 -13.20679 -12.93746 -12.89006 -12.41290 -12.32983 -11.97071 -11.82757 -11.14560 -11.06105 -10.90103 -10.63027 -10.43493 -10.39425 -10.27168 -10.17032 -9.39972 -9.13122 -8.97717 -8.39607 -8.18087 -6.03848 -4.06658 3.10932 3.30722 3.37699 3.40574 3.46187 4.43055 4.67975 4.77872 4.93184 5.05738 5.13762 5.28491 5.32457 5.55894 5.58974 5.74168 5.76271 5.94173 5.95683 6.00642 6.09651 6.15159 6.29252 6.51765 6.55780 6.71198 6.94363 7.11441 7.55820 7.61800 7.71628 7.93626 8.34347 8.71385 8.99383 9.57939 11.07320 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045152 B = 0.006717 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.981797 B = 4167.637164 C = 4209.826181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.090 4.090 11 H 0.083 0.917 12 C -0.148 4.148 13 C 0.527 3.473 14 O -0.545 6.545 15 N -0.610 5.610 16 C 0.133 3.867 17 C -0.157 4.157 18 C -0.137 4.137 19 C -0.149 4.149 20 C 0.102 3.898 21 H 0.261 0.739 22 H 0.021 0.979 23 H 0.018 0.982 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.258 -12.888 1.230 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.109 4.109 11 H 0.102 0.898 12 C -0.188 4.188 13 C 0.317 3.683 14 O -0.423 6.423 15 N -0.342 5.342 16 C 0.029 3.971 17 C -0.195 4.195 18 C -0.175 4.175 19 C -0.188 4.188 20 C -0.021 4.021 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.037 0.963 24 H 0.105 0.895 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.120 -12.868 1.867 13.051 hybrid contribution 0.294 0.946 -0.170 1.005 sum 1.414 -11.922 1.697 12.125 Atomic orbital electron populations 1.69955 1.06096 1.26703 1.50525 1.25011 0.94816 0.99294 0.95203 0.86605 0.79919 0.83502 0.78067 1.20669 1.21272 1.19784 1.21174 0.93069 0.90750 1.50922 0.92381 1.19129 0.93313 0.90605 0.97564 1.22337 0.98139 0.94189 0.96248 0.89841 1.22422 0.98397 1.01016 0.96952 1.21169 0.79561 0.80290 0.87317 1.90584 1.68627 1.69267 1.13865 1.48329 1.38483 1.38778 1.08642 1.22478 0.91528 0.88380 0.94691 1.23507 1.01252 0.97704 0.97035 1.22651 0.98311 0.97091 0.99444 1.23357 0.99377 0.98097 0.97925 1.22327 1.01527 0.97275 0.80970 0.92953 0.96081 0.96348 0.89533 0.86833 0.87642 0.87413 0.91578 0.90474 0.91209 0.91720 0.89419 0.90743 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.98 8.17 -34.44 -0.28 -14.26 16 8 H 0.06 1.50 7.65 -52.49 -0.40 1.10 16 9 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 10 C -0.09 -1.69 3.13 -88.99 -0.28 -1.96 16 11 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 12 C -0.15 -2.76 6.23 -26.74 -0.17 -2.92 16 13 C 0.53 10.22 7.42 -10.72 -0.08 10.15 16 14 O -0.54 -11.79 14.62 5.56 0.08 -11.71 16 15 N -0.61 -10.27 3.15 -163.82 -0.52 -10.78 16 16 C 0.13 1.91 4.62 -67.11 -0.31 1.60 16 17 C -0.16 -2.35 7.48 -25.83 -0.19 -2.54 16 18 C -0.14 -1.65 8.09 -25.83 -0.21 -1.86 16 19 C -0.15 -1.94 7.60 -25.91 -0.20 -2.13 16 20 C 0.10 1.60 6.90 -3.12 -0.02 1.58 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.11 2.39 7.14 -51.93 -0.37 2.02 16 26 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.11 1.97 5.72 -51.93 -0.30 1.68 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.34 7.20 -51.93 -0.37 0.96 16 33 H 0.07 1.15 7.91 -51.93 -0.41 0.74 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -30.44 276.79 -7.72 -38.16 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.22 Total: -0.26 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.96 Total: -10.21 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.22 Total: -36.41 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.44 -7.72 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.789 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds