Wall clock time and date at job start Mon Mar 30 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48499 * 109.47331 * 270.00013 * 3 2 1 5 5 H 1.48504 * 109.47005 * 30.00321 * 3 2 1 6 6 H 1.48509 * 109.46861 * 149.99696 * 3 2 1 7 7 C 1.37880 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00054 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99587 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46786 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.88044 * 302.63945 * 10 9 7 12 12 C 1.54623 * 110.97415 * 66.45113 * 10 9 7 13 13 C 1.51282 * 104.31101 * 93.25686 * 12 10 9 14 14 O 1.21281 * 124.94192 * 196.29810 * 13 12 10 15 15 N 1.34735 * 109.93792 * 16.31290 * 13 12 10 16 16 C 1.46501 * 124.30373 * 180.38847 * 15 13 12 17 17 C 1.53784 * 113.61218 * 39.09452 * 16 15 13 18 18 C 1.53955 * 87.02160 * 220.05089 * 17 16 15 19 19 C 1.53781 * 87.11057 * 25.36564 * 18 17 16 20 20 C 1.46768 * 111.35098 * 0.35387 * 15 13 12 21 21 H 0.96993 * 120.00260 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47758 * 60.00197 * 9 7 2 23 23 H 1.09001 * 109.47316 * 299.99623 * 9 7 2 24 24 H 1.09002 * 110.48860 * 212.00160 * 12 10 9 25 25 H 1.08998 * 110.48497 * 334.51053 * 12 10 9 26 26 H 1.08995 * 112.85130 * 170.29449 * 16 15 13 27 27 H 1.08999 * 113.61633 * 334.57305 * 17 16 15 28 28 H 1.09003 * 113.60781 * 105.47162 * 17 16 15 29 29 H 1.09001 * 113.53320 * 270.81437 * 18 17 16 30 30 H 1.08997 * 113.74181 * 139.94999 * 18 17 16 31 31 H 1.09001 * 113.60994 * 220.09320 * 19 18 17 32 32 H 1.08994 * 113.69035 * 89.19421 * 19 18 17 33 33 H 1.09000 * 110.24529 * 224.01554 * 20 15 13 34 34 H 1.09008 * 110.31722 * 102.05615 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 1 2.9160 -3.6000 -0.8585 12 6 3.0424 -3.7084 1.3227 13 6 2.2565 -4.6586 2.1991 14 8 2.3799 -4.7575 3.4016 15 7 1.4011 -5.3773 1.4460 16 6 0.4811 -6.3863 1.9768 17 6 -0.1557 -5.9933 3.3203 18 6 0.0335 -7.4603 3.7475 19 6 1.1857 -7.5263 2.7312 20 6 1.5084 -5.0194 0.0267 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8880 24 1 4.0478 -4.0923 1.1496 25 1 3.0860 -2.7184 1.7766 26 1 -0.2399 -6.7328 1.2365 27 1 0.4432 -5.2895 3.8981 28 1 -1.2003 -5.6931 3.2370 29 1 -0.8111 -8.1003 3.4922 30 1 0.3563 -7.5779 4.7819 31 1 1.2225 -8.4618 2.1731 32 1 2.1527 -7.2427 3.1465 33 1 0.5161 -4.9192 -0.4131 34 1 2.0844 -5.7726 -0.5111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260269865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:17 Heat of formation + Delta-G solvation = -44.658717 kcal Electronic energy + Delta-G solvation = -15601.296038 eV Core-core repulsion = 13112.413241 eV Total energy + Delta-G solvation = -2488.882797 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71018 -38.80796 -37.66298 -35.13087 -32.97766 -29.59617 -28.21638 -26.57605 -25.88967 -24.76584 -21.69357 -21.11638 -19.69013 -18.43089 -17.90823 -17.07555 -16.43739 -16.36092 -15.68061 -14.96577 -14.64589 -14.57078 -14.20033 -14.02136 -13.93543 -13.38648 -13.14346 -12.86891 -12.70640 -12.37751 -12.28032 -12.13645 -11.79956 -11.50227 -11.44154 -11.18871 -11.06763 -10.57046 -10.42104 -9.51154 -8.17687 -6.26721 1.41337 1.42792 1.52843 1.62126 2.17979 2.42550 3.16975 3.50416 3.69448 3.73532 3.82273 3.97078 3.98418 4.18106 4.27759 4.53299 4.71128 4.75318 4.78368 4.87699 5.00085 5.01519 5.02536 5.12811 5.18363 5.28690 5.38837 5.51173 5.71879 5.84485 5.86123 6.24153 6.26321 6.90115 7.25921 7.42251 8.94006 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.045152 B = 0.006717 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.981797 B = 4167.637164 C = 4209.826181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.067 0.933 9 C 0.038 3.962 10 C -0.085 4.085 11 H 0.106 0.894 12 C -0.145 4.145 13 C 0.515 3.485 14 O -0.578 6.578 15 N -0.607 5.607 16 C 0.122 3.878 17 C -0.172 4.172 18 C -0.121 4.121 19 C -0.140 4.140 20 C 0.107 3.893 21 H 0.261 0.739 22 H 0.003 0.997 23 H -0.021 1.021 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -14.473 0.102 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.085 0.915 9 C 0.001 3.999 10 C -0.103 4.103 11 H 0.124 0.876 12 C -0.185 4.185 13 C 0.305 3.695 14 O -0.459 6.459 15 N -0.338 5.338 16 C 0.020 3.980 17 C -0.210 4.210 18 C -0.159 4.159 19 C -0.179 4.179 20 C -0.015 4.015 21 H 0.070 0.930 22 H 0.021 0.979 23 H -0.002 1.002 24 H 0.137 0.863 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.878 -14.475 0.715 14.614 hybrid contribution 0.016 1.434 0.192 1.447 sum 1.894 -13.040 0.907 13.208 Atomic orbital electron populations 1.70091 1.07789 1.27517 1.52162 1.25921 0.95632 1.03205 0.95124 0.85552 0.78697 0.78954 0.78505 1.19493 1.21550 1.18819 1.21662 0.93743 0.91921 1.49552 0.91492 1.18965 0.93744 0.92486 0.94698 1.22174 0.97356 0.93743 0.97076 0.87613 1.22375 1.00188 0.99490 0.96425 1.21349 0.80259 0.80825 0.87092 1.90566 1.69794 1.70370 1.15163 1.48460 1.37854 1.38585 1.08930 1.22896 0.91886 0.88191 0.95029 1.23486 1.00762 0.99073 0.97719 1.22657 0.98958 0.95013 0.99276 1.23239 0.98116 0.98579 0.97964 1.22390 1.02046 0.96426 0.80623 0.93042 0.97901 1.00234 0.86320 0.89961 0.84596 0.91437 0.91180 0.87302 0.91430 0.88693 0.92135 0.90414 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.53 -28.71 8.17 25.60 0.21 -28.50 16 8 H 0.07 3.42 7.65 -2.91 -0.02 3.40 16 9 C 0.04 1.88 4.42 29.85 0.13 2.01 16 10 C -0.08 -3.05 3.13 -9.74 -0.03 -3.08 16 11 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 12 C -0.14 -5.31 6.23 30.59 0.19 -5.12 16 13 C 0.51 20.05 7.42 87.85 0.65 20.70 16 14 O -0.58 -25.81 14.62 -3.03 -0.04 -25.85 16 15 N -0.61 -19.62 3.15 -790.61 -2.49 -22.12 16 16 C 0.12 3.28 4.62 45.52 0.21 3.49 16 17 C -0.17 -5.10 7.48 31.18 0.23 -4.87 16 18 C -0.12 -2.67 8.09 31.18 0.25 -2.42 16 19 C -0.14 -3.32 7.60 31.12 0.24 -3.08 16 20 C 0.11 3.09 6.90 86.83 0.60 3.69 16 21 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 22 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 23 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 24 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 25 H 0.08 3.54 7.14 -2.39 -0.02 3.53 16 26 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.07 2.59 5.72 -2.39 -0.01 2.57 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.79 7.20 -2.39 -0.02 1.77 16 33 H 0.08 2.22 7.91 -2.39 -0.02 2.21 16 34 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -68.41 276.79 3.99 -64.43 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.07 Total: 10.65 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 3.15 Total: -16.81 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.21 Total: -78.32 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.04 Total: -25.85 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.41 3.99 -64.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.767 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds