Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.64364 * 300.69811 * 9 7 2 11 11 C 1.55154 * 110.72201 * 63.84401 * 9 7 2 12 12 C 1.55124 * 101.48928 * 153.73423 * 11 9 7 13 13 N 1.47423 * 104.93746 * 323.22039 * 12 11 9 14 14 C 1.34778 * 125.64373 * 203.96564 * 13 12 11 15 15 O 1.21284 * 119.99876 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00426 * 0.04143 * 14 13 12 17 17 C 1.52999 * 109.47353 * 179.97438 * 16 14 13 18 18 C 1.52990 * 117.50167 * 243.74841 * 17 16 14 19 19 C 1.53001 * 117.49795 * 175.08596 * 17 16 14 20 20 C 1.47014 * 108.70729 * 24.00455 * 13 12 11 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.09003 * 111.00340 * 271.93824 * 11 9 7 23 23 H 1.09001 * 111.00763 * 35.78793 * 11 9 7 24 24 H 1.09003 * 110.41931 * 204.29285 * 12 11 9 25 25 H 1.08995 * 110.29897 * 82.08914 * 12 11 9 26 26 H 1.08992 * 109.47133 * 300.00352 * 16 14 13 27 27 H 1.09009 * 109.46495 * 60.00270 * 16 14 13 28 28 H 1.09003 * 115.54318 * 29.42786 * 17 16 14 29 29 H 1.08996 * 117.50227 * 0.02562 * 18 17 16 30 30 H 1.09007 * 117.49931 * 145.02518 * 18 17 16 31 31 H 1.08992 * 117.49906 * 214.98103 * 19 17 16 32 32 H 1.08992 * 117.49785 * 359.97438 * 19 17 16 33 33 H 1.08997 * 109.88459 * 239.52524 * 20 13 12 34 34 H 1.08998 * 110.01374 * 118.42589 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6076 -2.5675 0.8886 11 6 0.4231 -2.6607 -1.2906 12 6 0.3276 -4.2047 -1.4066 13 7 1.6315 -4.7027 -0.9319 14 6 2.1854 -5.8875 -1.2573 15 8 3.2680 -6.1953 -0.8053 16 6 1.4599 -6.8297 -2.1829 17 6 2.3003 -8.0918 -2.3872 18 6 2.8116 -8.3791 -3.8003 19 6 1.6830 -9.2264 -3.2074 20 6 2.2270 -3.6934 -0.0442 21 1 -0.4850 0.8401 -0.0041 22 1 -0.5647 -2.2123 -1.1837 23 1 0.9518 -2.2379 -2.1449 24 1 0.1637 -4.4988 -2.4433 25 1 -0.4758 -4.5824 -0.7743 26 1 0.4985 -7.0996 -1.7461 27 1 1.2982 -6.3418 -3.1442 28 1 2.9453 -8.3672 -1.5528 29 1 2.5497 -7.6688 -4.5844 30 1 3.7930 -8.8439 -3.8956 31 1 1.9224 -10.2482 -2.9129 32 1 0.6782 -9.0739 -3.6010 33 1 3.1876 -3.3687 -0.4438 34 1 2.3622 -4.1083 0.9546 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -23.411286 kcal Electronic energy + Delta-G solvation = -15141.689790 eV Core-core repulsion = 12653.728351 eV Total energy + Delta-G solvation = -2487.961439 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51728 -37.41545 -36.34553 -33.04713 -30.73753 -29.09186 -28.19028 -24.82640 -22.47435 -22.37272 -20.75214 -19.65014 -18.63727 -16.92050 -16.37123 -15.73008 -15.33869 -14.58736 -14.21251 -13.97237 -13.82102 -12.63976 -12.58382 -12.33138 -12.00695 -11.56705 -11.43184 -11.25935 -11.23078 -11.03694 -10.78733 -10.49059 -10.36886 -10.00083 -9.82267 -9.51208 -9.26202 -8.98526 -8.49651 -7.96882 -6.11976 -4.15044 3.09653 3.26964 3.33928 3.37645 3.53793 3.83656 4.38036 4.70217 4.79866 4.91129 5.15121 5.22330 5.47138 5.54663 5.59055 5.63651 5.70563 5.84037 5.90852 5.99750 6.05793 6.26030 6.32957 6.33566 6.65973 6.84968 7.00327 7.11687 7.45440 7.69286 7.87209 8.17061 8.27683 8.67303 8.86728 9.49903 10.97930 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060090 B = 0.005532 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.855714 B = 5059.906399 C = 5221.874782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.041 0.959 11 C -0.109 4.109 12 C 0.091 3.909 13 N -0.612 5.612 14 C 0.521 3.479 15 O -0.556 6.556 16 C -0.106 4.106 17 C -0.136 4.136 18 C -0.179 4.179 19 C -0.183 4.183 20 C 0.110 3.890 21 H 0.261 0.739 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -11.783 -6.036 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.059 0.941 11 C -0.147 4.147 12 C -0.032 4.032 13 N -0.344 5.344 14 C 0.310 3.690 15 O -0.435 6.435 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.216 4.216 19 C -0.220 4.220 20 C -0.011 4.011 21 H 0.071 0.929 22 H 0.102 0.898 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.789 -11.882 -5.800 13.246 hybrid contribution 0.311 0.991 -0.083 1.042 sum -0.478 -10.891 -5.882 12.387 Atomic orbital electron populations 1.69940 1.05913 1.26767 1.50116 1.24951 0.94883 0.99139 0.94732 0.86557 0.79921 0.83177 0.78168 1.20639 1.21182 1.19803 1.21046 0.92950 0.89892 1.51461 0.92269 1.19723 0.92560 0.91126 0.94205 0.94126 1.22788 1.02413 0.89087 1.00433 1.22598 0.84528 0.98310 0.97778 1.48749 1.21019 1.17035 1.47626 1.20139 0.85789 0.81211 0.81899 1.90638 1.21755 1.75408 1.55724 1.21182 0.99196 0.94127 1.00043 1.22070 1.02303 0.95202 0.95888 1.23024 0.98572 1.03464 0.96573 1.22993 0.98064 0.96129 1.04818 1.22320 0.98510 0.88525 0.91761 0.92882 0.89830 0.92236 0.92247 0.92281 0.88882 0.89160 0.86489 0.88895 0.88904 0.88876 0.88866 0.92161 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 12.29 55.43 0.68 -23.64 16 2 C 0.07 1.74 5.35 -17.82 -0.10 1.64 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.71 8.48 -34.44 -0.29 -14.00 16 8 H 0.06 1.58 7.55 -52.49 -0.40 1.18 16 9 C 0.04 1.03 2.82 -89.94 -0.25 0.77 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.11 -2.32 5.86 -24.47 -0.14 -2.47 16 12 C 0.09 1.57 6.69 -2.41 -0.02 1.55 16 13 N -0.61 -11.85 3.33 -170.39 -0.57 -12.42 16 14 C 0.52 9.64 7.85 -10.98 -0.09 9.56 16 15 O -0.56 -12.14 15.89 5.55 0.09 -12.05 16 16 C -0.11 -1.43 4.99 -27.88 -0.14 -1.57 16 17 C -0.14 -1.75 5.41 -90.62 -0.49 -2.24 16 18 C -0.18 -1.98 10.18 -26.70 -0.27 -2.25 16 19 C -0.18 -1.82 10.26 -26.69 -0.27 -2.09 16 20 C 0.11 2.44 6.46 -3.07 -0.02 2.42 16 21 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 22 H 0.08 1.87 7.65 -51.93 -0.40 1.48 16 23 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 24 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.10 7.58 -51.92 -0.39 0.70 16 28 H 0.12 1.72 7.31 -51.93 -0.38 1.34 16 29 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.40 7.64 -51.93 -0.40 1.01 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -29.10 283.29 -7.91 -37.01 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.28 Total: -0.23 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.08 Total: -8.68 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.11 Total: -36.06 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.10 -7.91 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.601 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds