Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.64364 * 300.69811 * 9 7 2 11 11 C 1.55154 * 110.72201 * 63.84401 * 9 7 2 12 12 C 1.55124 * 101.48928 * 153.73423 * 11 9 7 13 13 N 1.47423 * 104.93746 * 323.22039 * 12 11 9 14 14 C 1.34778 * 125.64373 * 203.96564 * 13 12 11 15 15 O 1.21284 * 119.99876 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00426 * 0.04143 * 14 13 12 17 17 C 1.52999 * 109.47353 * 179.97438 * 16 14 13 18 18 C 1.52990 * 117.50167 * 243.74841 * 17 16 14 19 19 C 1.53001 * 117.49795 * 175.08596 * 17 16 14 20 20 C 1.47014 * 108.70729 * 24.00455 * 13 12 11 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.09003 * 111.00340 * 271.93824 * 11 9 7 23 23 H 1.09001 * 111.00763 * 35.78793 * 11 9 7 24 24 H 1.09003 * 110.41931 * 204.29285 * 12 11 9 25 25 H 1.08995 * 110.29897 * 82.08914 * 12 11 9 26 26 H 1.08992 * 109.47133 * 300.00352 * 16 14 13 27 27 H 1.09009 * 109.46495 * 60.00270 * 16 14 13 28 28 H 1.09003 * 115.54318 * 29.42786 * 17 16 14 29 29 H 1.08996 * 117.50227 * 0.02562 * 18 17 16 30 30 H 1.09007 * 117.49931 * 145.02518 * 18 17 16 31 31 H 1.08992 * 117.49906 * 214.98103 * 19 17 16 32 32 H 1.08992 * 117.49785 * 359.97438 * 19 17 16 33 33 H 1.08997 * 109.88459 * 239.52524 * 20 13 12 34 34 H 1.08998 * 110.01374 * 118.42589 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6076 -2.5675 0.8886 11 6 0.4231 -2.6607 -1.2906 12 6 0.3276 -4.2047 -1.4066 13 7 1.6315 -4.7027 -0.9319 14 6 2.1854 -5.8875 -1.2573 15 8 3.2680 -6.1953 -0.8053 16 6 1.4599 -6.8297 -2.1829 17 6 2.3003 -8.0918 -2.3872 18 6 2.8116 -8.3791 -3.8003 19 6 1.6830 -9.2264 -3.2074 20 6 2.2270 -3.6934 -0.0442 21 1 -0.4850 0.8401 -0.0041 22 1 -0.5647 -2.2123 -1.1837 23 1 0.9518 -2.2379 -2.1449 24 1 0.1637 -4.4988 -2.4433 25 1 -0.4758 -4.5824 -0.7743 26 1 0.4985 -7.0996 -1.7461 27 1 1.2982 -6.3418 -3.1442 28 1 2.9453 -8.3672 -1.5528 29 1 2.5497 -7.6688 -4.5844 30 1 3.7930 -8.8439 -3.8956 31 1 1.9224 -10.2482 -2.9129 32 1 0.6782 -9.0739 -3.6010 33 1 3.1876 -3.3687 -0.4438 34 1 2.3622 -4.1083 0.9546 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -39.979073 kcal Electronic energy + Delta-G solvation = -15142.408223 eV Core-core repulsion = 12653.728351 eV Total energy + Delta-G solvation = -2488.679872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99667 -38.71877 -37.66161 -34.97644 -32.42653 -30.47047 -29.77381 -26.71837 -24.02011 -23.19221 -21.99849 -21.29527 -20.05229 -18.70835 -17.94449 -16.95605 -16.90170 -16.51090 -15.49101 -15.32137 -14.93644 -14.41900 -14.24912 -13.69366 -13.44981 -13.09042 -12.98567 -12.91140 -12.67357 -12.38752 -12.31027 -12.26220 -11.60179 -11.38460 -11.26515 -10.98779 -10.91556 -10.70653 -10.51370 -9.56908 -8.17089 -6.26309 1.41875 1.43692 1.53262 1.66588 2.10221 2.43577 2.94892 3.14907 3.59865 3.80425 4.03572 4.08871 4.17260 4.30352 4.42461 4.46155 4.54611 4.67734 4.74990 4.79904 4.80487 4.83144 5.06485 5.12135 5.27732 5.30277 5.34893 5.39703 5.58356 5.77537 5.86654 6.27403 6.68371 6.79377 7.19903 7.41260 8.92077 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060090 B = 0.005532 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.855714 B = 5059.906399 C = 5221.874782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.018 0.982 11 C -0.101 4.101 12 C 0.102 3.898 13 N -0.616 5.616 14 C 0.515 3.485 15 O -0.597 6.597 16 C -0.092 4.092 17 C -0.164 4.164 18 C -0.183 4.183 19 C -0.156 4.156 20 C 0.120 3.880 21 H 0.264 0.736 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.039 0.961 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -12.760 -7.605 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.018 3.982 10 H 0.036 0.964 11 C -0.140 4.140 12 C -0.020 4.020 13 N -0.349 5.349 14 C 0.306 3.694 15 O -0.479 6.479 16 C -0.131 4.131 17 C -0.183 4.183 18 C -0.220 4.220 19 C -0.193 4.193 20 C -0.003 4.003 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.853 -12.872 -7.382 14.954 hybrid contribution 0.673 1.274 0.443 1.507 sum -1.180 -11.598 -6.939 13.567 Atomic orbital electron populations 1.70022 1.06874 1.27571 1.50433 1.25614 0.95706 1.01972 0.94354 0.85634 0.78656 0.79519 0.78324 1.19986 1.20563 1.19866 1.21325 0.92769 0.91588 1.51972 0.93358 1.19640 0.92852 0.90951 0.94755 0.96361 1.22561 1.00777 0.92492 0.98159 1.22613 0.83876 0.94815 1.00649 1.48837 1.21693 1.17019 1.47347 1.21162 0.85447 0.81047 0.81734 1.90620 1.23826 1.76143 1.57304 1.21214 0.99422 0.92938 0.99574 1.21972 1.03622 0.96587 0.96105 1.23140 0.99362 1.04029 0.95491 1.23099 0.98588 0.95582 1.02031 1.21960 0.97320 0.88908 0.92121 0.92682 0.91015 0.93671 0.88162 0.90248 0.86339 0.86892 0.89285 0.87944 0.88948 0.87879 0.86820 0.94213 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.08 12.29 21.45 0.26 -49.82 16 2 C 0.02 1.27 5.35 84.66 0.45 1.73 16 3 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.34 8.48 25.60 0.22 -29.12 16 8 H 0.05 2.66 7.55 -2.91 -0.02 2.64 16 9 C 0.04 1.82 2.82 -10.35 -0.03 1.79 16 10 H 0.02 0.96 8.14 -2.39 -0.02 0.95 16 11 C -0.10 -4.29 5.86 32.06 0.19 -4.10 16 12 C 0.10 3.27 6.69 86.93 0.58 3.85 16 13 N -0.62 -23.26 3.33 -811.38 -2.70 -25.96 16 14 C 0.51 18.46 7.85 87.66 0.69 19.14 16 15 O -0.60 -26.35 15.89 -3.04 -0.05 -26.40 16 16 C -0.09 -2.20 4.99 29.85 0.15 -2.05 16 17 C -0.16 -3.87 5.41 -10.80 -0.06 -3.93 16 18 C -0.18 -3.57 10.18 30.62 0.31 -3.26 16 19 C -0.16 -2.54 10.26 30.62 0.31 -2.23 16 20 C 0.12 5.41 6.46 86.73 0.56 5.97 16 21 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 22 H 0.07 3.20 7.65 -2.39 -0.02 3.18 16 23 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 24 H 0.10 2.46 7.48 -2.39 -0.02 2.44 16 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.11 2.22 7.58 -2.38 -0.02 2.21 16 28 H 0.09 2.61 7.31 -2.39 -0.02 2.59 16 29 H 0.10 1.79 8.03 -2.39 -0.02 1.78 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.93 7.64 -2.39 -0.02 1.91 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -64.23 283.29 3.98 -60.25 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.06 Total: 9.37 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.37 Total: -12.21 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.44 Total: -75.78 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.23 3.98 -60.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.275 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds