Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99627 * 2 1 4 4 C 1.39675 * 110.99805 * 123.94657 * 2 1 3 5 5 C 1.38889 * 120.06243 * 299.72567 * 4 2 1 6 6 C 1.38304 * 119.89696 * 179.74222 * 5 4 2 7 7 F 1.35099 * 119.98424 * 180.28118 * 6 5 4 8 8 C 1.38537 * 120.02462 * 0.53666 * 6 5 4 9 9 C 1.38230 * 120.12657 * 359.71837 * 8 6 5 10 10 C 1.38138 * 120.09606 * 0.02582 * 9 8 6 11 11 C 1.50695 * 120.01494 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.46995 * 265.02065 * 11 10 9 13 13 H 1.07994 * 119.99561 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99970 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00037 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46928 * 90.00312 * 16 14 12 18 18 H 1.48498 * 109.47447 * 210.00189 * 16 14 12 19 19 H 1.48504 * 109.46915 * 330.00453 * 16 14 12 20 20 H 1.08998 * 109.47271 * 300.00349 * 1 2 3 21 21 H 1.08996 * 109.47517 * 60.00771 * 1 2 3 22 22 H 1.09006 * 109.46752 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47027 * 179.97438 * 3 2 1 24 24 H 1.09006 * 109.46834 * 299.99189 * 3 2 1 25 25 H 1.09000 * 109.47587 * 59.99818 * 3 2 1 26 26 H 1.07998 * 120.04721 * 0.02562 * 5 4 2 27 27 H 1.07999 * 119.94017 * 179.70181 * 8 6 5 28 28 H 1.07996 * 119.95610 * 179.97438 * 9 8 6 29 29 H 1.09002 * 109.46962 * 25.01728 * 11 10 9 30 30 H 1.08997 * 109.47713 * 145.01595 * 11 10 9 31 31 H 0.97001 * 120.00240 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9695 -0.7282 1.0817 5 6 1.6624 -0.3442 2.3807 6 6 2.1554 -1.0709 3.4492 7 9 1.8531 -0.7023 4.7133 8 6 2.9635 -2.1734 3.2238 9 6 3.2742 -2.5533 1.9315 10 6 2.7802 -1.8343 0.8604 11 6 3.1205 -2.2498 -0.5476 12 6 4.3113 -1.4620 -1.0298 13 1 4.7754 -0.7338 -0.3814 14 6 4.8088 -1.6719 -2.2985 15 7 4.2445 -2.5598 -3.0875 16 14 6.2844 -0.6949 -2.8965 17 1 7.5321 -1.4244 -2.5555 18 1 6.1993 -0.5210 -4.3688 19 1 6.2949 0.6373 -2.2404 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.0850 1.3424 0.0005 24 1 1.6459 1.8947 -0.8901 25 1 1.6458 1.8948 0.8899 26 1 1.0357 0.5177 2.5559 27 1 3.3517 -2.7369 4.0593 28 1 3.9047 -3.4129 1.7590 29 1 3.3573 -3.3136 -0.5653 30 1 2.2687 -2.0563 -1.1995 31 1 4.5942 -2.7072 -3.9802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = -17.265140 kcal Electronic energy + Delta-G solvation = -15166.005326 eV Core-core repulsion = 12554.850098 eV Total energy + Delta-G solvation = -2611.155227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.48693 -39.37395 -35.93038 -33.28569 -30.98298 -29.63911 -27.19457 -26.79090 -24.25976 -23.14941 -21.11550 -20.23864 -17.15533 -16.27055 -16.10135 -15.22851 -15.09645 -14.74337 -14.46160 -14.14279 -13.86811 -13.19333 -12.76773 -12.36985 -12.06533 -11.78522 -11.66547 -11.32318 -11.22517 -11.08385 -10.78367 -10.58961 -10.28801 -9.61723 -9.37448 -8.45639 -8.33292 -7.95247 -7.71586 -5.95704 -3.96629 1.65398 1.78758 3.33617 3.40174 3.43304 4.11626 4.30629 4.51551 4.75528 5.19669 5.34252 5.40748 5.56832 5.59273 5.70333 5.84608 5.89147 5.94614 6.13216 6.20339 6.36751 6.49871 6.69064 6.88423 6.97991 7.31843 7.37005 7.66859 7.83233 8.00516 8.00726 8.41618 9.05689 9.64414 11.14763 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.029210 B = 0.008913 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.340398 B = 3140.629405 C = 3524.910446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.486 5.486 3 C 0.037 3.963 4 C 0.108 3.892 5 C -0.186 4.186 6 C 0.069 3.931 7 F -0.154 7.154 8 C -0.155 4.155 9 C -0.096 4.096 10 C -0.019 4.019 11 C 0.058 3.942 12 C -0.493 4.493 13 H 0.051 0.949 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.021 0.979 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.018 0.982 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.022 0.978 30 H 0.046 0.954 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 3.793 8.361 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.206 5.206 3 C -0.110 4.110 4 C 0.014 3.986 5 C -0.207 4.207 6 C 0.049 3.951 7 F -0.133 7.133 8 C -0.174 4.174 9 C -0.115 4.115 10 C -0.020 4.020 11 C 0.021 3.979 12 C -0.532 4.532 13 H 0.070 0.930 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.039 0.961 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.036 0.964 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.221 3.530 7.764 10.000 hybrid contribution 0.504 1.071 0.614 1.334 sum -4.717 4.601 8.378 10.659 Atomic orbital electron populations 1.22430 0.86978 1.02186 1.00111 1.59436 1.07007 1.13770 1.40373 1.22369 1.01814 0.87208 0.99616 1.18458 0.97682 0.95387 0.87104 1.21518 1.04436 1.01678 0.93044 1.17388 1.01881 0.97509 0.78296 1.91421 1.92216 1.91485 1.38128 1.21068 1.00594 0.97295 0.98445 1.20982 0.99439 1.00413 0.90654 1.20801 0.90824 0.91334 0.99079 1.18249 0.97754 0.96185 0.85723 1.20879 1.12306 1.21250 0.98729 0.93024 1.24927 0.97059 0.95468 0.96730 1.69948 1.40957 1.34079 1.08454 0.86618 0.83104 0.80518 0.77879 1.20838 1.21304 1.19992 0.96097 0.91148 0.91356 0.90525 0.91274 0.96373 0.86167 0.85666 0.84961 0.95944 0.93597 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.29 60.07 0.56 1.01 16 2 N -0.49 -9.09 4.03 -186.86 -0.75 -9.85 16 3 C 0.04 0.61 9.33 60.06 0.56 1.17 16 4 C 0.11 2.09 4.69 -83.79 -0.39 1.70 16 5 C -0.19 -3.23 8.63 -39.32 -0.34 -3.57 16 6 C 0.07 1.19 7.30 -39.45 -0.29 0.90 16 7 F -0.15 -2.56 17.27 2.25 0.04 -2.52 16 8 C -0.16 -2.59 10.02 -39.47 -0.40 -2.98 16 9 C -0.10 -1.79 9.67 -39.62 -0.38 -2.18 16 10 C -0.02 -0.41 5.09 -104.41 -0.53 -0.94 16 11 C 0.06 1.45 4.80 -29.03 -0.14 1.31 16 12 C -0.49 -13.45 9.09 -34.44 -0.31 -13.76 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H 0.02 0.28 7.28 -51.93 -0.38 -0.10 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 23 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.02 0.26 7.46 -51.93 -0.39 -0.12 16 26 H 0.12 1.89 7.08 -52.49 -0.37 1.52 16 27 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 28 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.02 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.05 1.24 7.62 -51.93 -0.40 0.85 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 270.98 15.07 4.08 4.08 Total: -1.00 -29.16 270.98 -6.70 -35.86 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.03 Total: -2.73 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.76 Total: -15.80 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.02 Total: -35.28 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.16 -6.70 -35.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.595 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds